PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006622

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

GRAS

Protein Properties

Length: 463aa MW: 51011.2 Da PI: 4.8325

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-33264	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	242	2.5e-74	224	461	1	242
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lv++L++cAeav+ g+l+ a++++++++ las +g +m ++a+yf+eALa+r+++ ++ ++l+ ++++ s+ l++ f++++P+lkf+h++aNq Pta006622 224 LVHTLMACAEAVQRGNLAIAREMVKEVRILASAQGGAMSKVATYFAEALARRIYGFLPQ--DTLRFNQND--PLSDFLQF--HFYQTCPYLKFAHFIANQ 317 689**************************************************3333..222332222..14555444..3************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.g 199 aIl+a++g+++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++ +++l+e+g rL++fAe+++v+f+f+ va++l+d+++++L+ +p Pta006622 318 AILDAFSGHQQVHVIDFNLKQGIQWPALIQALALRPGGPPAFRLTGIGPPQPDGTDALQEVGTRLHQFAESVNVKFSFRGYVATSLADIKPWMLDARPeL 417 ****************************************************************************9999**********88 PP GRAS 200 EalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvv 242 +aVn++l+lhrll + + + ++d+ L + l+P ++vv Pta006622 418 XXVAVNSILELHRLLXXPIPXRXsAIDRXLASIXXLKPXXLTVV 461 9**********9999887769***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	1.2E-11	3	35	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	42.267	198	463	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.6E-72	224	461	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MKEEDGIISH LSSEAVHYNP SDLGGWIESM LSELHVPILP PTDQPFQFPQ AAADQSSTVR 60 EASNSVPESS TSTSKGTRSV QNVEQDQQYR LNGSGAGLFE PPEVLDRSEF QLHGYPGQGG 120 VRDNGIDRMF GNYGGLFSQV LDVSDLLVDD PDVLQEPPPQ EASPSTLLLQ SSSTSSLEVQ 180 SGQDRLEEDV TGREQKRYRV CDPELSERTV VVMGADPHES GVRLVHTLMA CAEAVQRGNL 240 AIAREMVKEV RILASAQGGA MSKVATYFAE ALARRIYGFL PQDTLRFNQN DPLSDFLQFH 300 FYQTCPYLKF AHFIANQAIL DAFSGHQQVH VIDFNLKQGI QWPALIQALA LRPGGPPAFR 360 LTGIGPPQPD GTDALQEVGT RLHQFAESVN VKFSFRGYVA TSLADIKPWM LDARPELXXV 420 AVNSILELHR LLXXPIPXRX SAIDRXLASI XXLKPXXLTV VXX

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MKEEDGIISH LSSEAVHYNP SDLGGWIESM LSELHVPILP PTDQPFQFPQ AAADQSSTVR  60
EASNSVPESS TSTSKGTRSV QNVEQDQQYR LNGSGAGLFE PPEVLDRSEF QLHGYPGQGG  120
VRDNGIDRMF GNYGGLFSQV LDVSDLLVDD PDVLQEPPPQ EASPSTLLLQ SSSTSSLEVQ  180
SGQDRLEEDV TGREQKRYRV CDPELSERTV VVMGADPHES GVRLVHTLMA CAEAVQRGNL  240
AIAREMVKEV RILASAQGGA MSKVATYFAE ALARRIYGFL PQDTLRFNQN DPLSDFLQFH  300
FYQTCPYLKF AHFIANQAIL DAFSGHQQVH VIDFNLKQGI QWPALIQALA LRPGGPPAFR  360
LTGIGPPQPD GTDALQEVGT RLHQFAESVN VKFSFRGYVA TSLADIKPWM LDARPELXXV  420
AVNSILELHR LLXXPIPXRX SAIDRXLASI XXLKPXXLTV VXX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-30	219	395	13	191	Protein SCARECROW
5b3h_D	1e-30	219	395	13	191	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.10420	0.0	embryo\| root\| shoot\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269\|PubMed:15347801}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q7Y1B6	1e-103	GAI_SOLLC; DELLA protein GAI
TrEMBL	X5CHV1	0.0	X5CHV1_PINTB; DPL

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]