PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006549

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

C3H

Protein Properties

Length: 480aa MW: 53124.3 Da PI: 8.0855

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-22351	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.9e-07	143	162	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f++ G C++Gd C +aHg Pta006549 143 CPDFRK-GSCRRGDACEYAHG 162 9***.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.7E-4	137	163	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.667	138	164	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-5	143	162	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-4	143	164	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	11	172	195	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.085	172	196	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MEYLQSLNLF SETSPNSEKS RYSKDSASVQ KLFNKSLSFG SNGLGVDFGG MESENFLVSP 60 RTVIESPDGI SSLHKFLPSN NEEEASWPAV DAYSCDEFRM YEFKVRRCMR GRSHDWTECP 120 FAHPGEKARR RDPRRFHYSG TGCPDFRKGS CRRGDACEYA HGVFECWLHP ARYRTQPCKD 180 GRNCRRRVCF FAHTPEQLRL LPGASQAQSH ASSNFGNRNS FQMRNAFSGS YDGSPLRYAV 240 TAAASLDGAF GYDGFDGNAS PRGPLNYLCK AKVKAKASQI SSPTSTLVGH SYSPPPLSPP 300 LSPSASPPIS PGSCLDSPVN YANSAVKCFP KSETNTAPVS FTPRGHLEKL ISIPPPNLDP 360 SPLSPAVHSP APSSKLIMEG LINTLQRMEI NGDTLPWRQQ QQQFNLPGRS CLSFPGAPRW 420 DDDAWEVEAA EDGSIQRVES GKHLRAKIYG RLTRESTLQD NNNTNTEYSP DLGWVNELVM

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MEYLQSLNLF SETSPNSEKS RYSKDSASVQ KLFNKSLSFG SNGLGVDFGG MESENFLVSP  60
RTVIESPDGI SSLHKFLPSN NEEEASWPAV DAYSCDEFRM YEFKVRRCMR GRSHDWTECP  120
FAHPGEKARR RDPRRFHYSG TGCPDFRKGS CRRGDACEYA HGVFECWLHP ARYRTQPCKD  180
GRNCRRRVCF FAHTPEQLRL LPGASQAQSH ASSNFGNRNS FQMRNAFSGS YDGSPLRYAV  240
TAAASLDGAF GYDGFDGNAS PRGPLNYLCK AKVKAKASQI SSPTSTLVGH SYSPPPLSPP  300
LSPSASPPIS PGSCLDSPVN YANSAVKCFP KSETNTAPVS FTPRGHLEKL ISIPPPNLDP  360
SPLSPAVHSP APSSKLIMEG LINTLQRMEI NGDTLPWRQQ QQQFNLPGRS CLSFPGAPRW  420
DDDAWEVEAA EDGSIQRVES GKHLRAKIYG RLTRESTLQD NNNTNTEYSP DLGWVNELVM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.16488	0.0	embryo\| needle\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024376584.1	1e-118	zinc finger CCCH domain-containing protein 30-like
TrEMBL	B8LMK4	1e-127	B8LMK4_PICSI; Uncharacterized protein
STRING	PP1S297_45V6.1	1e-117	(Physcomitrella patens)