PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006504
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family B3
Protein Properties Length: 496aa    MW: 56571.6 Da    PI: 8.7107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-72888PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-1282170299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                fkv+    +  s+ l +p ++ e++++k    ++ +le +sg  W v++   +++ + ++++GW+ Fv+++ ++ + ++vF+++++  f  +v++f++
  Pta006504  82 FKVM---GAEFSSYLEIPSECSEQIQIK--DCRDAILEGPSGYLWHVRI--YGSGTSAFFKDGWEIFVSDHLIQPNNIIVFRHVKDVHF--LVQIFES 170
                5555...333445699*****9999877..4569***************..999999*************************9887777..9*99986 PP
2B334.63.3e-113994563796
                EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                +l + ++ +W v++i +++s  + l+ GWk F+k+n+L+ gD ++F+l++  +  ++v++
  Pta006504 399 VLLSCQSGKWPVTFIGDRRS--CGLGPGWKYFAKDNELNIGDACIFELEDAVNHIFKVHI 456
                566677899*****555555..55***********************9876444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.23778171IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-1779176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-1779172IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-1380168No hitNo description
SMARTSM010198.0E-681171IPR003340B3 DNA binding domain
PfamPF023622.8E-1081170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-13359458IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-14361458IPR015300DNA-binding pseudobarrel domain
CDDcd100176.58E-10364458No hitNo description
SMARTSM010190.0052366460IPR003340B3 DNA binding domain
PfamPF023622.6E-8399457IPR003340B3 DNA binding domain
PROSITE profilePS508639.812399460IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
VHIHLHDVNG DFGRQSILGL CEVKKDGVRL FMLCNIKSIL VLKKLGQSLI AKSVMECCRA  60
CCEKCFRNHH TRHEFTHGSS FFKVMGAEFS SYLEIPSECS EQIQIKDCRD AILEGPSGYL  120
WHVRIYGSGT SAFFKDGWEI FVSDHLIQPN NIIVFRHVKD VHFLVQIFES SGYEKQSSFT  180
VKNSESCHLN KRGMSTICNH NSYIDKKNIT EKSIFEQERP TRNPLISDVE NTKKRFIQGT  240
GLKVHITETR VETSIPNRKS FSPKNHELLD HCKVSVKNAS RVQNLKWNSE NQVGLCAKQP  300
IILDSEDEPD SQASPAYSHD QDTIVYCHSG SEKFQEKLSS RGDICPDMQV KDLKASNSVK  360
RNKPKLSLVM KKTAVAAPFW LGWPKSFGRC WFPQGRVGVL LSCQSGKWPV TFIGDRRSCG  420
LGPGWKYFAK DNELNIGDAC IFELEDAVNH IFKVHIERQI KEEGKSKRIV LKGRSGRRNS  480
DRKPSLEYEI YLDYSE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.187710.0needle| root