PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006448
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family TALE
Protein Properties Length: 511aa    MW: 55776.2 Da    PI: 6.168
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-19276PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.63.7e-074604932154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++e+++L +++gL+ +q+ +WF N+R +
  Pta006448 460 KWPYPTEDEKARLVQETGLQLKQINNWFINQRKR 493
                469*****************************87 PP
2ELK25.14.2e-09414435122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK  L+++Y+ ++ ++++E++
  Pta006448 414 ELKVDLKQGYRAKIADVREEIL 435
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-16246290IPR005540KNOX1
PfamPF037901.1E-16247289IPR005540KNOX1
SMARTSM012561.3E-16301356IPR005541KNOX2
PfamPF037914.5E-14305355IPR005541KNOX2
PROSITE profilePS512139.271414434IPR005539ELK domain
PROSITE profilePS5007111.807434497IPR001356Homeobox domain
SuperFamilySSF466891.28E-15436500IPR009057Homeodomain-like
SMARTSM003892.5E-10436501IPR001356Homeobox domain
CDDcd000861.52E-11437498No hitNo description
Gene3DG3DSA:1.10.10.602.6E-24441498IPR009057Homeodomain-like
PfamPF059207.0E-17454493IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
RYSERRAPAG QLGIAEEGKE EIPIPRQRYG SLGYTEAQSS SSSAKAALAG AGECGGGDKV  60
PMLVLPLMSE SGSASENNVK LGTTNTWLSR AVSGQHRAQQ QQQQQQHYAE RSVEEGRKWC  120
GCAAGSRDCI HSNFLKLQNP ASAGSSSAAA NALSGRWLMP GPLLNDKIEG REGVELLGGE  180
IPGESIMALS AQFKTAGSAA PERGLLNLHS ADAVNSNGEP VDSGGAGGDR DGGEEAEDHA  240
ALWQSARIKA DIVSHPLYDQ LLSAHLECLR IATPKDQHSM IDAQLEQSQH VVTKYSVLGN  300
DNFLVGDKKE LDQFMTQYVL LLCSFKEQLQ YHVHVHVMEA VRACIDLQHS LLTLTGVSPG  360
EGTGATMSDD EDDNADSDTD LYDGGLDGGQ DIVGLGPLIP TESERSLMER VRQELKVDLK  420
QGYRAKIADV REEILRKRRA GKLPGDTTSR LKAWWQSHSK WPYPTEDEKA RLVQETGLQL  480
KQINNWFINQ RKRNWQSNPS SSTTLKSKRK R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-13437501872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490510RKRNWQSNPSSSTTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.118770.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862211.11e-152homeobox protein knotted-1-like 2
SwissprotP480001e-150KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLD5A9W30.0D5A9W3_PICSI; Uncharacterized protein
STRINGXP_010519640.11e-150(Tarenaya hassleriana)
STRINGXP_010265705.11e-149(Nelumbo nucifera)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]