PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta006426
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 517aa    MW: 55718.8 Da    PI: 6.4608
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-29080PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1491.3e-15311367359
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                +lkr rr+ +NRe+ArrsR+RK+a +  Le  v++L  eN +L k+l e+++++++ 
  Pta006426 311 DLKRMRRMLSNRESARRSRRRKQAHLSDLEMQVAQLRVENASLFKRLTEMSQKYSEA 367
                79******************************************9999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-12305364No hitNo description
SMARTSM003384.3E-17309373IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.438311366IPR004827Basic-leucine zipper domain
PfamPF001709.3E-14312365IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.97E-11313364No hitNo description
CDDcd147021.80E-6314365No hitNo description
PROSITE patternPS000360316331IPR004827Basic-leucine zipper domain
PfamPF124983.6E-20380493IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MERVFSVDDI LGTFWKMDTQ GEGVGETAPS GDMATNRTTT RTSMNRSASE WAFQRFITES  60
ASVPPTSPSG SSSPHIPNHQ DLDHKMKKNS SSSSAPTPTP PALVNVEEEE EEEEMREDVK  120
VEKEGKDVEQ GSKDKKEEVA AKGVVGNEPS PSSSSSVAVN VNPLSPLLKG TGSVIEKGVV  180
THTNPQEYES FLKQRLDLAC AAVALTRASG IDFHGAPPLT FGAQHSQNLG MESQAGSTLS  240
VAQSSGSRPI HNGALGHNVS QPIGIPALPP KPQSGTAQIK TTTSGSSREQ TDDDDLEAEI  300
EANQSSMDPS DLKRMRRMLS NRESARRSRR RKQAHLSDLE MQVAQLRVEN ASLFKRLTEM  360
SQKYSEAAVD NRVLRADVEA LRAKVKMAED MVARATGVNH SIQNPTQISQ ASGMRYMGGP  420
VESPVTSGPQ DSSRYSHPGQ PVSTQGMTCD VSNINDRSKE VLPHNVGTKM GRTPSMQRVA  480
SLEHLQKRIR GGVACGSTPW SGGWDIEGSP RIENGGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325332RRSRRRKQ
2327332SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ990901e-58CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA9NUK00.0A9NUK0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.23e-45bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]