PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta006374

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bHLH

Protein Properties

Length: 546aa MW: 59612 Da PI: 6.4594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Pinus_taeda-25282549	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	432	470	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L +A+ YIk Lq Pta006374 432 RKEKLGDRITALQQLVSPF-----GKTDTASVLLEAIGYIKFLQ 470 677888999*****998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.712	420	469	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-6	430	474	No hit	No description
SuperFamily	SSF47459	6.41E-11	430	480	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0016	431	475	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-9	434	477	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MAEEPETSST VSSGGNWWNA VSSGSSSSLV SEWSNINMLQ PAPCAASAAL TDIQSLNWSS 60 SSNHHIRNSG NAEDVDNLSS SMTNNTSSSL TSLDSGHQAE LVDSGSLLGQ FAHGVSDNNN 120 LWNQMLLGSS EYSRALRQEL VEPSEQLKKI QQEVPLQGWE FRNMASFQPE DIHLNQQAQQ 180 HAPLLYNLGD RLQSSNSHAL PDIGRWSVAQ PKQPGHALPR NISLNTAYSN TPQFDLSRIK 240 QEYPVPYTTP DLGVSLSSNA PLLQGFGIHA DPNFKNEGFC HILESPTTKA FLKPGMGAAR 300 GCPISGDDYP GRWLPNSSLS QMLPSSPSKQ SVLNFGSMSK QVLDFSACKS DHLKTVQQVS 360 KTDCNLQYFP DGKQIHSPHA QHRTMPHGEE ARDSSSDTKR INNCTDQSTA DQAIFKRPRL 420 ETGSTIPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLL EAIGYIKFLQ EQVQALSTPY 480 LKSVGTSNPG SQDHKGWGSS DKKDSDEPKQ DLRSRGLCLV PVSCTLHVAN DNGADYWTPT 540 LGGTYR

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MAEEPETSST VSSGGNWWNA VSSGSSSSLV SEWSNINMLQ PAPCAASAAL TDIQSLNWSS  60
SSNHHIRNSG NAEDVDNLSS SMTNNTSSSL TSLDSGHQAE LVDSGSLLGQ FAHGVSDNNN  120
LWNQMLLGSS EYSRALRQEL VEPSEQLKKI QQEVPLQGWE FRNMASFQPE DIHLNQQAQQ  180
HAPLLYNLGD RLQSSNSHAL PDIGRWSVAQ PKQPGHALPR NISLNTAYSN TPQFDLSRIK  240
QEYPVPYTTP DLGVSLSSNA PLLQGFGIHA DPNFKNEGFC HILESPTTKA FLKPGMGAAR  300
GCPISGDDYP GRWLPNSSLS QMLPSSPSKQ SVLNFGSMSK QVLDFSACKS DHLKTVQQVS  360
KTDCNLQYFP DGKQIHSPHA QHRTMPHGEE ARDSSSDTKR INNCTDQSTA DQAIFKRPRL  420
ETGSTIPTFK VRKEKLGDRI TALQQLVSPF GKTDTASVLL EAIGYIKFLQ EQVQALSTPY  480
LKSVGTSNPG SQDHKGWGSS DKKDSDEPKQ DLRSRGLCLV PVSCTLHVAN DNGADYWTPT  540
LGGTYR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.34337	0.0	root

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	7e-43	bHLH family protein