PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pta005603 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||||||
Family | HB-other | ||||||||||||
Protein Properties | Length: 171aa MW: 19606.1 Da PI: 9.1921 | ||||||||||||
Description | HB-other family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 71 | 1.4e-22 | 18 | 73 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q++eLe+lF+k+++p++++r +L++ lgL+ rqVk+WFqNrR+++k Pta005603 18 RKRYHRHTAHQIQELEALFKKHPHPDEKQRLQLSRDLGLEPRQVKFWFQNRRTQMK 73 789999***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 4 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-21 | 8 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.961 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-19 | 16 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.48E-17 | 18 | 75 | No hit | No description |
Pfam | PF00046 | 3.8E-20 | 18 | 73 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 8.4E-5 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.4E-5 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 171 aa Download sequence Send to blast |
MEGSGSDQDA ADQQNPARKR YHRHTAHQIQ ELEALFKKHP HPDEKQRLQL SRDLGLEPRQ 60 VKFWFQNRRT QMKAQGERAD NNTLRAENER IRGENLAIRE ALKYVLCSNC GGPPAGETSF 120 EEQHRLRLEN ARLKEELDRL SGIAAKYIGR PIQTTASLHP ISMPSLDMGM V |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006849468.1 | 3e-78 | homeobox-leucine zipper protein ROC8 isoform X2 | ||||
Refseq | XP_020526173.1 | 8e-78 | homeobox-leucine zipper protein ROC8 isoform X1 | ||||
Refseq | XP_020526174.1 | 3e-78 | homeobox-leucine zipper protein ROC8 isoform X2 | ||||
Swissprot | Q69T58 | 1e-67 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A0C9QWV4 | 8e-82 | A0A0C9QWV4_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_2540_2939 transcribed RNA sequence | ||||
STRING | ERN11049 | 1e-77 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 7e-70 | homeodomain GLABROUS 11 |