PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pta005402 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||||||
Family | Trihelix | ||||||||||||
Protein Properties | Length: 185aa MW: 21728.3 Da PI: 6.0439 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.8 | 2.5e-22 | 93 | 172 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+l+Li++r+e e r++r+ +k lW+e+++ +r+++f r ++qC++kwe+l +k ++eg k+r ++ py+++l+ Pta005402 93 WTRVETLKLIKLRTEFEPRFSRSGRKTELWDEIAESLRKEQFFRDAQQCRDKWEKLMAGFKDVREGLKDR--ND---NPYYEDLH 172 ********************************************************************97..33...48999886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 8.386 | 85 | 149 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 88 | 149 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-5 | 89 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.67E-24 | 91 | 156 | No hit | No description |
Pfam | PF13837 | 1.9E-17 | 91 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 185 aa Download sequence Send to blast |
MEEPLQIINS SPIQQQHDHV DDDHGHGHEE EVIPHPLLPP PGDTCIVPYI MPVSTSTAEK 60 HPPQPTNLAF NGPETEEDDK KRDREHKKRS KNWTRVETLK LIKLRTEFEP RFSRSGRKTE 120 LWDEIAESLR KEQFFRDAQQ CRDKWEKLMA GFKDVREGLK DRNDNPYYED LHPLLSGKCL 180 RTENL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pta.13346 | 0.0 | root| xylem |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024519538.1 | 6e-52 | trihelix transcription factor GTL1 | ||||
Refseq | XP_024529458.1 | 5e-52 | trihelix transcription factor GTL1 | ||||
TrEMBL | A0A0D6QU72 | 1e-68 | A0A0D6QU72_ARACU; Uncharacterized protein | ||||
STRING | EFJ08922 | 4e-51 | (Selaginella moellendorffii) | ||||
STRING | EFJ29776 | 4e-51 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-13 | Trihelix family protein |