PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta005231 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | LSD | ||||||||||||
Protein Properties | Length: 195aa MW: 20686.2 Da PI: 8.2046 | ||||||||||||
Description | LSD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41 | 3.2e-13 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YP GAp+V+Ca+C+tV Pta005231 27 CSGCRTLLVYPQGAPNVCCAVCNTV 51 ************************9 PP | |||||||
2 | zf-LSD1 | 42.2 | 1.3e-13 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg CrtlL+Y rGA+sV+C++C+tV Pta005231 66 CGRCRTLLMYVRGATSVQCSCCNTV 90 ************************9 PP | |||||||
3 | zf-LSD1 | 42.7 | 8.9e-14 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C t+L+YP+GApsV+Ca+C+ V Pta005231 104 CGSCFTTLMYPYGAPSVKCAVCHYV 128 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.1E-13 | 24 | 53 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.7E-12 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 2.41E-5 | 41 | 127 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 3.4E-14 | 63 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.0E-12 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.0E-11 | 101 | 131 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-13 | 104 | 128 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MPLHMNPYHP QSMPLPPPNG MQGQLVCSGC RTLLVYPQGA PNVCCAVCNT VTPVPPPGTE 60 MAQLICGRCR TLLMYVRGAT SVQCSCCNTV NLAMEANQVA HVSCGSCFTT LMYPYGAPSV 120 KCAVCHYVTN VGQISNMRMP LPVQRPPAAA TTPASSSALP TRSQTQTVVV ENPMTVDERG 180 KMVSNVAVGV TTEKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.13941 | 0.0 | root| shoot| xylem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002963886.1 | 3e-86 | protein LOL1 | ||||
Refseq | XP_002988289.1 | 3e-86 | protein LOL1 | ||||
Swissprot | Q6ASS2 | 8e-68 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A0C9RP33 | 1e-102 | A0A0C9RP33_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_6820_1247 transcribed RNA sequence | ||||
STRING | EFJ10708 | 1e-85 | (Selaginella moellendorffii) | ||||
STRING | EFJ35757 | 1e-85 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-60 | lsd one like 1 |
Publications ? help Back to Top | |||
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