PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta005162 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | ERF | ||||||||||||
Protein Properties | Length: 200aa MW: 21858.2 Da PI: 6.3643 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9.4e-19 | 121 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdps+ g +r++lg+f taeeAa a+++a+ +++g Pta005162 121 HYRGVRKRS-WGKFAAEIRDPSKKG--ARIWLGTFITAEEAALAYDRAAFRIRG 171 7*****888.**********97744..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 120 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.53E-31 | 121 | 179 | No hit | No description |
Pfam | PF00847 | 1.1E-11 | 121 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-22 | 121 | 180 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.709 | 121 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-38 | 121 | 185 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MDITAGQMLQ LIRHHLLEEE DEMDVLEVGG NYPFSSSSSS LSFSPTVSSD FSHATASGPC 60 QTSDSTSLSG ENESAQPSSA SSSSSVSTVL RRSEAVNVKV MPLPQPQPQE EESRETIKDR 120 HYRGVRKRSW GKFAAEIRDP SKKGARIWLG TFITAEEAAL AYDRAAFRIR GSRALLNFPL 180 AFTSESESGS AVSHKRMRGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-34 | 118 | 184 | 2 | 68 | ATERF1 |
3gcc_A | 8e-34 | 118 | 184 | 2 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.17876 | 0.0 | embryo| root| shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NMA3 | 5e-55 | A9NMA3_PICSI; Uncharacterized protein | ||||
STRING | GLYMA01G41520.1 | 8e-36 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 7e-26 | ethylene responsive element binding factor 2 |