PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta005130

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YC

Protein Properties

Length: 202aa MW: 22406.6 Da PI: 6.6814

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S16798307	PU_unref	Unigene	View CDS
gnl\|UG\|Pta#S21726372	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-39382551	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.6	1e-54	40	143	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw +q +e+a+dfk h+lPlarikki+kadedvkmisaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+ rtdifdflvdivp Pta005130 40 QLQAFWGNQmreVEQAQDFKTHSLPLARIKKIMKADEDVKMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAIGRTDIFDFLVDIVP 139 89****9777799*********************************************************************************** PP NF-YC 98 rdel 101 rde Pta005130 140 RDEF 143 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.84E-32	36	134	IPR009072	Histone-fold
Pfam	PF00808	2.2E-21	62	125	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.6E-37	63	140	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDQQQPTIPA LPQVGYGTNP YIAPPIGGPP HPQLASYHQQ LQAFWGNQMR EVEQAQDFKT 60 HSLPLARIKK IMKADEDVKM ISAEAPVVFA KACEMFILEL TLRSWIHTEE NKRRTLQKND 120 IAAAIGRTDI FDFLVDIVPR DEFKDEGLVI PRAAGAVPFM GPGDNVPSYY YVAQQAPNMA 180 AYAPPTQQMR SKAPAPPPHG SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-56	48	140	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.2715	0.0	embryo\| needle\| root\| shoot\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008775727.1	7e-72	nuclear transcription factor Y subunit C-4-like
Refseq	XP_008775728.1	7e-72	nuclear transcription factor Y subunit C-4-like
Refseq	XP_008775729.1	7e-72	nuclear transcription factor Y subunit C-4-like
Refseq	XP_026656552.1	7e-72	nuclear transcription factor Y subunit C-4-like
Refseq	XP_026656553.1	7e-72	nuclear transcription factor Y subunit C-4-like
Swissprot	Q8LCG7	7e-68	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	A9NKR8	1e-145	A9NKR8_PICSI; Uncharacterized protein
TrEMBL	B2LSM2	1e-145	B2LSM2_PICWI; HAP5B
STRING	XP_008775725.1	3e-71	(Phoenix dactylifera)

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]