PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta005089 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | NF-YA | ||||||||||||
Protein Properties | Length: 204aa MW: 22324 Da PI: 7.8235 | ||||||||||||
Description | NF-YA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106.2 | 2.8e-33 | 106 | 162 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh hAl+R+Rg+gGrF Pta005089 106 EEPVYVNAKQYNGILRRRQSRAKAESENKL-IKNRKPYLHESRHLHALKRARGCGGRF 162 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.5E-37 | 104 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.559 | 105 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.2E-28 | 107 | 162 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.8E-23 | 108 | 130 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 110 | 130 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 7.8E-23 | 139 | 162 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MENTPTHTVX IDGSAPDEQQ PQADPVQQEA PPPGMIPPPA MTLLPPEFVM PHTQLELGQT 60 MVRAAYPYPD PYFGGIVAAY GPQAVIHPHM LGVPHAGVPL PSDAIEEPVY VNAKQYNGIL 120 RRRQSRAKAE SENKLIKNRK PYLHESRHLH ALKRARGCGG RFLNAKKPDE VSQENNSNGS 180 IVLVSSVDKP AAEKKNSSQQ NTDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 9e-22 | 105 | 169 | 1 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.4063 | 0.0 | embryo| needle| root| shoot| xylem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020268973.1 | 2e-70 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_020268974.1 | 2e-70 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_020268975.1 | 2e-70 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_020268976.1 | 2e-70 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Swissprot | Q84JP1 | 5e-49 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A0D6R4Z2 | 1e-65 | A0A0D6R4Z2_ARACU; Uncharacterized protein | ||||
TrEMBL | A0A2K1KAU8 | 2e-65 | A0A2K1KAU8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S42_174V6.1 | 3e-66 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 2e-51 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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