PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pta004786 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||||||
Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 220aa MW: 25266 Da PI: 9.9446 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.4 | 7.9e-28 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 k+ien+ rqvtf+kRr g++KKA+ELSvLCda+va+i+fss+gklye Pta004786 9 KKIENSVHRQVTFCKRRGGLMKKAYELSVLCDADVALIVFSSRGKLYE 56 68*********************************************9 PP | |||||||
2 | K-box | 80 | 5.6e-27 | 88 | 179 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ e+++qe++ Lk++i++L+ ++R l+Ge+L+s s++eL qLe++L+++++++R+kK+el+l++i+ lq ke+ l+ +n++L+++lee Pta004786 88 SNNTSDEKMKQEINLLKQQIDQLKLTNRYLMGEGLGSVSFEELTQLESRLQRGINQVRAKKHELMLDEIRALQSKEHTLRINNMMLQERLEE 179 56677899*******************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.09E-31 | 1 | 86 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.791 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.11E-41 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 2.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-25 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-23 | 89 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.431 | 93 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MGRGKIEIKK IENSVHRQVT FCKRRGGLMK KAYELSVLCD ADVALIVFSS RGKLYELGTS 60 NNNNNRSMRS ILERYQKCSQ TAKHMNFSNN TSDEKMKQEI NLLKQQIDQL KLTNRYLMGE 120 GLGSVSFEEL TQLESRLQRG INQVRAKKHE LMLDEIRALQ SKEHTLRINN MMLQERLEEC 180 TNGKRLSSLL THGFTTLLPN QHVPSGYDLS NQSLSSNVEM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-18 | 1 | 80 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 3e-18 | 1 | 80 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 3e-18 | 1 | 80 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 3e-18 | 1 | 80 | 1 | 74 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pta.9455 | 0.0 | root| xylem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds (Ref.1). Expressed in endotesta cell layer of developing seeds (PubMed:28369525). {ECO:0000269|PubMed:28369525, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}. | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018674454.1 | 1e-60 | PREDICTED: MADS-box transcription factor 3-like isoform X1 | ||||
Refseq | XP_018674455.1 | 9e-61 | PREDICTED: MADS-box transcription factor 3-like isoform X2 | ||||
Swissprot | A0A217EJJ0 | 4e-57 | AG11S_VITVI; Agamous-like MADS-box protein AGL11 | ||||
Swissprot | F6I457 | 4e-57 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A0K0M6Z8 | 1e-151 | A0A0K0M6Z8_PINTB; DAL5 | ||||
STRING | GSMUA_Achr10P21480_001 | 2e-58 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42830.1 | 5e-58 | MIKC_MADS family protein |