PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pta004764 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||||||
Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 221aa MW: 25283.8 Da PI: 10.1263 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.3 | 2.8e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ienk+nrqvtfskRr+g++KKA+ELS+LCdaevavi+fs++gkly +ss Pta004764 10 MIENKINRQVTFSKRRTGLMKKASELSILCDAEVAVIVFSNRGKLYQFSS 59 59**********************************************96 PP | |||||||
2 | K-box | 63.4 | 8.2e-22 | 80 | 154 | 11 | 85 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +++ + +++el+ Lk++++nLqr Rh++GedL++Ls+keLqqLeqqLe++lk+++ kK++ l + kk + Pta004764 80 SKDPQDSNTELTELKRKTDNLQRWRRHVMGEDLDQLSVKELQQLEQQLEEGLKQVKLKKEQQLEGAKKSRHKKLQ 154 5678999******************************************************99877666665554 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.567 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-32 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.11E-40 | 2 | 73 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-27 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.6E-16 | 82 | 157 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.927 | 83 | 164 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MGRGRVQLRM IENKINRQVT FSKRRTGLMK KASELSILCD AEVAVIVFSN RGKLYQFSSS 60 SMTKILERHR KCSTLVEDIS KDPQDSNTEL TELKRKTDNL QRWRRHVMGE DLDQLSVKEL 120 QQLEQQLEEG LKQVKLKKEQ QLEGAKKSRH KKLQLSELRG KYPCDQYPIP ISGSSWHSTA 180 GNYNTHVLSR HCEPTLHIGC PSGSTGNHIP GHMQSGNYDG R |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-21 | 1 | 96 | 1 | 91 | MEF2 CHIMERA |
6byy_B | 6e-21 | 1 | 96 | 1 | 91 | MEF2 CHIMERA |
6byy_C | 6e-21 | 1 | 96 | 1 | 91 | MEF2 CHIMERA |
6byy_D | 6e-21 | 1 | 96 | 1 | 91 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pta.14916 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development in the inner and outer integuments. Not detected in young panicles. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:19820190}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the floral meristem. Highly expressed in lodicules. Expressed in palea and pistil. Weakly expressed in carpels, empty glumes and stamens. Not detected in lemmas. {ECO:0000269|PubMed:10444103, ECO:0000269|PubMed:19820190}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020676503.1 | 2e-55 | MADS-box transcription factor 6-like | ||||
Swissprot | Q6EU39 | 4e-53 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | Q58A82 | 1e-59 | Q58A82_GINBI; MADS-box transcription factor GbMADS1 | ||||
STRING | Aquca_013_00477.1 | 1e-54 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15800.1 | 1e-41 | MIKC_MADS family protein |