PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pta004730 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||||||
Family | GRAS | ||||||||||||
Protein Properties | Length: 222aa MW: 24662.8 Da PI: 7.1262 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 221.5 | 4.3e-68 | 4 | 214 | 155 | 374 |
GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 e+le+tg+rL++fA++l++pfef++ va+++ +l++e+L+v++g+alaV++ + h+l+d ++s ++ +L+l+++lsPkv++vveq+++h ++sFl Pta004730 4 LEALEATGKRLSDFAHTLNLPFEFHP-VADKVGKLDPERLKVNRGDALAVHWLH--HSLYDVTGSDTN----TLRLLQRLSPKVITVVEQDLSH-GGSFL 95 5789**********************.7*************************9..999999999999....**********************.789** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 rf+ea++yysalfdsl a++p++s++r+ vE++ll+rei+n++a g +r+ + + + +Wr++l++ GFkp++l +aa+qa lll +++ +gy++ ee Pta004730 96 SRFVEAIHYYSALFDSLGASYPEDSHDRHLVEQQLLSREIKNILAVGGPARTGEVK-FDNWRDQLKQTGFKPISLAGNAATQATLLLGMFPCQGYTLMEE 194 **************************************************998887.******************************************* PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 +g+l lgWk+ L+++SaWr Pta004730 195 NGTLKLGWKGLCLLTASAWR 214 *******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.122 | 1 | 194 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-65 | 4 | 214 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
XTSLEALEAT GKRLSDFAHT LNLPFEFHPV ADKVGKLDPE RLKVNRGDAL AVHWLHHSLY 60 DVTGSDTNTL RLLQRLSPKV ITVVEQDLSH GGSFLSRFVE AIHYYSALFD SLGASYPEDS 120 HDRHLVEQQL LSREIKNILA VGGPARTGEV KFDNWRDQLK QTGFKPISLA GNAATQATLL 180 LGMFPCQGYT LMEENGTLKL GWKGLCLLTA SAWRPAHHGL IY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-118 | 2 | 215 | 166 | 379 | Protein SCARECROW |
5b3h_D | 1e-118 | 2 | 215 | 166 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pta.18792 | 0.0 | needle| root| shoot |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008788032.1 | 1e-124 | protein SCARECROW 2-like isoform X2 | ||||
Refseq | XP_010931426.1 | 1e-124 | protein SCARECROW 2 | ||||
Swissprot | Q2Z2E9 | 1e-118 | SCR_IPONI; Protein SCARECROW | ||||
TrEMBL | A0A0B4U7W6 | 1e-156 | A0A0B4U7W6_PINRA; SCR | ||||
STRING | XP_008788030.1 | 1e-123 | (Phoenix dactylifera) | ||||
STRING | XP_010278894.1 | 1e-123 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-117 | GRAS family protein |