PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta004651 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | Dof | ||||||||||||
Protein Properties | Length: 226aa MW: 25428.2 Da PI: 8.8516 | ||||||||||||
Description | Dof family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.8 | 1.7e-36 | 84 | 141 | 2 | 59 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++k ++cprC+s++tkfCy+nny+++qPr++C+ C+ryWt+GG+lrnvPvG+grrknk Pta004651 84 PTKLVPCPRCESMDTKFCYFNNYNVNQPRHYCRRCQRYWTTGGSLRNVPVGAGRRKNK 141 67889****************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 73 | 141 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-30 | 87 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.922 | 88 | 142 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 90 | 126 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVAVNAEIMP KFEGKSAKSL DSTFKLFGRT IVVKNPCDSS SNGIHVDGIP AEAVNSAVPK 60 ASETHHHDEK QKQNEDSEKV GKKPTKLVPC PRCESMDTKF CYFNNYNVNQ PRHYCRRCQR 120 YWTTGGSLRN VPVGAGRRKN KPCFGINHRQ IMDDTETGWN DVQGQASRGN SDKLVKVEPF 180 YPEFEKFREG LNEAATPKEG NSKPQSIIQS QFDDYSHPST VNLARX |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.3937 | 0.0 | xylem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021282282.1 | 7e-37 | cyclic dof factor 3-like | ||||
TrEMBL | T2B8A9 | 1e-161 | T2B8A9_PINPS; Dof8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29160.1 | 3e-36 | Dof family protein |