PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004643
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bZIP
Protein Properties Length: 226aa    MW: 24580.4 Da    PI: 8.0742
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-23882548PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_174.41.6e-2383145163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++kv++L+ eN+aL++el+++ +e++kl++e+
  Pta004643  83 ERELKRQRRKQSNRESARRSRLRKQAECEELATKVETLTVENMALRNELNRMAEECKKLTAEN 145
                89**********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-2076142No hitNo description
PfamPF001708.1E-2183145IPR004827Basic-leucine zipper domain
SMARTSM003383.1E-2283147IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.64585148IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-1286142No hitNo description
CDDcd147023.34E-2288138No hitNo description
PROSITE patternPS00036090105IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
NPISQAVAAV PLGSVTGKPA TSGPITNLNI GMDYWNATPP GAITTVKGRG STAGISTAIV  60
PATAQLMPSG RDGVPPELWI QDERELKRQR RKQSNRESAR RSRLRKQAEC EELATKVETL  120
TVENMALRNE LNRMAEECKK LTAENASIME QLKLNGQDMT TITEENGSTK ISLQSVKPEG  180
NGHFHDISRG INSNSTERNE QRQSETCDSN GKVHTLLDAN ARSDTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199105RRSRLRK
299106RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.117260.0needle| root| shoot| xylem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006856057.12e-60G-box-binding factor 1 isoform X1
RefseqXP_011627687.12e-60G-box-binding factor 1 isoform X1
RefseqXP_011627689.12e-60light-inducible protein CPRF3 isoform X2
RefseqXP_020530214.12e-60G-box-binding factor 1 isoform X1
RefseqXP_020530215.12e-60G-box-binding factor 1 isoform X1
RefseqXP_020530216.12e-60light-inducible protein CPRF3 isoform X2
RefseqXP_020530218.12e-60G-box-binding factor 1 isoform X3
SwissprotQ501B23e-42BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0C9QT241e-129A0A0C9QT24_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_10978_2763 transcribed RNA sequence
STRINGERN175247e-60(Amborella trichopoda)
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]