PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta004636

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

G2-like

Protein Properties

Length: 227aa MW: 25934.7 Da PI: 8.6176

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25801256	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-61877	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.2e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp LH++Fv+ave+LGG +kAtPk +l+lm+ gLt++hvkSHLQ+YR+ Pta004636 19 PRLRWTPSLHRCFVNAVERLGGRDKATPKLVLQLMNARGLTISHVKSHLQMYRT 72 8****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-30	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.208	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-15	18	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MESCERKGRV RQYIRSTVPR LRWTPSLHRC FVNAVERLGG RDKATPKLVL QLMNARGLTI 60 SHVKSHLQMY RTEKNNQRNH ESQTQNCQQQ SMPTNSQKQH ITDNDGEEDL CSDFSKTSTC 120 SSAYSLGTTH KRLWMGDTDS FIMASERRAL DHVNSIEQQP TWTDSMQPGT GRHGHIAEEA 180 PTPTDIFNKG NSDCRSQTSL KGNEVEHLVR ILLLRHEQSN AMDKPQX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	3e-31	G2-like family protein