PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta004487

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NAC

Protein Properties

Length: 234aa MW: 26939.7 Da PI: 9.0923

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25805881	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-54251	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	5e-53	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 + pGfrFhPtdeelv +yL++kv++++l++ e ik++diyk++PwdLpk+++ +ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ +++ Pta004487 14 MLPGFRFHPTDEELVGFYLRRKVQQRPLSI-ELIKQLDIYKYDPWDLPKMASIGEKEWYFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIYSSdGTKC 112 579*************************.89***********888889************************************956667 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfykgra kg ktdW+mhe+rl Pta004487 113 IGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-59	13	170	IPR003441	NAC domain
PROSITE profile	PS51005	57.568	14	169	IPR003441	NAC domain
Pfam	PF02365	3.1E-26	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEQKDDIDQA DEMMLPGFRF HPTDEELVGF YLRRKVQQRP LSIELIKQLD IYKYDPWDLP 60 KMASIGEKEW YFYCPRDRKY RNSARPNRVT SAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPTAADSKSS LDKNLPPNDA WAICRIFKKN TIAQRALSHA 180 WAPPLAERRV ESISSPMNSD MVSGNCMGAV NFIHDPEEQS NETRNQTSTS SIFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	1	175	6	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	1	175	6	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	1	175	6	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	1	175	6	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-56	1	175	6	171	NAC domain-containing protein 19
4dul_B	2e-56	1	175	6	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269\|PubMed:19081078}.
Uniprot	TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269\|PubMed:19081078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010257331.1	1e-117	PREDICTED: protein FEZ isoform X2
Swissprot	Q9ZVH0	4e-97	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1U7ZUM6	1e-115	A0A1U7ZUM6_NELNU; protein FEZ isoform X2
STRING	XP_010257321.1	1e-114	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	2e-99	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]