PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TF ID | Pta004389 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
|
||||||||||||
Family | WRKY | ||||||||||||
Protein Properties | Length: 238aa MW: 27536.7 Da PI: 7.2645 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.9 | 2.1e-28 | 137 | 194 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYG+K vk+s++pr+YYrC+ ++C vkk ver+++d+ vv++ Y g+Hnhe Pta004389 137 EDGYKWRKYGKKFVKNSTNPRNYYRCSDSNCDVKKTVERDSRDKGVVITSYLGRHNHE 194 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-29 | 125 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-26 | 128 | 196 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.725 | 131 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-29 | 136 | 195 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-22 | 137 | 194 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence Send to blast |
MGHFRAAIKV FKKEQAQLLQ EANCSEQMSQ RGESFEPSDF LDLEEGFNQS SMKEDGDDEV 60 NNIKDVNTGP SMQQEYADSL YSNPPCIRGF HLDHSSNVIQ SHELEEAISP KKSSRKRKAE 120 RPLKYAFLTR SEIDILEDGY KWRKYGKKFV KNSTNPRNYY RCSDSNCDVK KTVERDSRDK 180 GVVITSYLGR HNHESPCVIY YIAQPDILHQ QRQPTVSPLL QHLSSVRNYL PGNFEQHQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-21 | 129 | 196 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-21 | 129 | 196 | 10 | 77 | Probable WRKY transcription factor 4 |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pta.20866 | 0.0 | root| shoot |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64810.1 | 3e-30 | WRKY DNA-binding protein 51 |