PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta004278 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | ZF-HD | ||||||||||||
Protein Properties | Length: 244aa MW: 27027.9 Da PI: 9.495 | ||||||||||||
Description | ZF-HD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.6 | 3.5e-34 | 45 | 101 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eC+kNhAas+G+ha+DGCgEfmps geegt +alkCaAC+CHRnFHRreve Pta004278 45 KSVRYRECMKNHAASIGTHAIDGCGEFMPS-GEEGTLEALKCAACNCHRNFHRREVEG 101 679**************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-23 | 44 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.3E-31 | 47 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.9E-31 | 48 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.33 | 49 | 98 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.9E-20 | 170 | 242 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-31 | 174 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-26 | 181 | 237 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
RPGPISVSYG PIHESSKLKI LTPGGNGAAA SDEQQQQVQQ AAAKKSVRYR ECMKNHAASI 60 GTHAIDGCGE FMPSGEEGTL EALKCAACNC HRNFHRREVE GEPPCYYCYN PRKDGRKRPS 120 GGSPLPLALP STSPSGVITR PSPQMIMAFG SGPTHENDQQ EHDLGSLHGL HGAQMAMPIM 180 KKRFRTKFTQ EQKDKMCSFA EKLGWRIQKH DEAAVQQFCM ELGVKRHVLK VWMHNNKHTL 240 GKKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-27 | 182 | 239 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.18272 | 0.0 | needle| shoot |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393207.1 | 1e-79 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024393215.1 | 1e-79 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024393224.1 | 1e-79 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 6e-64 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 5e-64 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | D5ADH8 | 1e-156 | D5ADH8_PICSI; Uncharacterized protein | ||||
STRING | PP1S230_85V6.1 | 4e-79 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 3e-62 | homeobox protein 21 |
Publications ? help Back to Top | |||
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