PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta004163 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | HB-other | ||||||||||||
Protein Properties | Length: 249aa MW: 28001.5 Da PI: 7.3421 | ||||||||||||
Description | HB-other family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.8 | 5.1e-05 | 63 | 102 | 27 | 56 |
HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkkl..........gLterqVkvWFqNrRakek 56 ++++ LA+k ++ +qV +WFqNr++ +k Pta004163 63 RDTISSLAEKFsaaperagktLVQWKQVWTWFQNRKYAQK 102 55555555555555555555578889**********9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 0.001 | 39 | 104 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.13E-7 | 40 | 105 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 1.8E-28 | 142 | 249 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
XAGDIYFPLS SETFPKRIIT GRWSYYMMGR PPVSGAPVFR FFPKEVQEME KFLEDGKAFI 60 PPRDTISSLA EKFSAAPERA GKTLVQWKQV WTWFQNRKYA QKAKGTKVPG KTVASHRDDS 120 RAKRVVTNSV AVPSGRTDQD ASEMEFEAKS SRDGAWYDVA SFVTHRMFES GDPLAELMPL 180 SACAEVRVRF AGFGAEEDEW VNVKKCVRQR SLPCEASECV AVLSGDLILC FQEGKEQALY 240 FDAHVLDAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 2e-32 | 141 | 249 | 1 | 98 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-32 | 141 | 249 | 1 | 98 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-32 | 141 | 249 | 1 | 98 | SHH1 SAWADEE |
4iur_B | 2e-32 | 141 | 249 | 1 | 98 | SHH1 SAWADEE |
4iut_A | 2e-32 | 141 | 249 | 1 | 98 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-32 | 141 | 249 | 1 | 98 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-32 | 141 | 249 | 1 | 98 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-32 | 141 | 249 | 1 | 98 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-32 | 141 | 249 | 1 | 98 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-32 | 141 | 249 | 1 | 98 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010275167.1 | 1e-102 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Refseq | XP_010275168.1 | 1e-102 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 5e-83 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | D5ACD8 | 1e-133 | D5ACD8_PICSI; Uncharacterized protein | ||||
STRING | XP_010275166.1 | 1e-102 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 1e-85 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |