PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta003932 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | Whirly | ||||||||||||
Protein Properties | Length: 259aa MW: 28678.8 Da PI: 9.0372 | ||||||||||||
Description | Whirly family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 167.2 | 4.3e-52 | 79 | 216 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101 +yk+kaal +++++p++++ldsg ++l+++G ++le+a+a+++r+ydW+kkq fals+ e+++l+++ +ke+ceffhdp+ ++s++Gk++k+lkv l d Pta003932 79 LYKGKAALGIQPKAPEYTTLDSGGIRLSKEGCVFLEFAPAVGTRQYDWSKKQIFALSVLELGTLLSFDPKEPCEFFHDPFLGKSEAGKIQKVLKVGMLQD 178 7*************************************************************************************************** PP Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 G+f+nl v+ ++ +es+ +P++k+ef+v++s+++ Pta003932 179 AGGYFFNLRVSDRTLNIDESLFMPITKGEFSVMQSAFN 216 ***********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 16 | No hit | No description |
Gene3D | G3DSA:2.30.31.10 | 3.1E-69 | 68 | 238 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.84E-62 | 72 | 256 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 2.5E-51 | 79 | 214 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLRFHGLGTH FLGAACARPI QPLRTASISS RSFLKVVKAS FNDDSSQSHS FSSSPDHSAV 60 TQPGFLRGQP SKIYVKYTLY KGKAALGIQP KAPEYTTLDS GGIRLSKEGC VFLEFAPAVG 120 TRQYDWSKKQ IFALSVLELG TLLSFDPKEP CEFFHDPFLG KSEAGKIQKV LKVGMLQDAG 180 GYFFNLRVSD RTLNIDESLF MPITKGEFSV MQSAFNFILP YLMGWHAYMN SEKPNESGHL 240 TSASPSIGKK AELEWDVPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 8e-76 | 72 | 257 | 37 | 220 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 8e-76 | 72 | 257 | 37 | 220 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 8e-76 | 72 | 257 | 37 | 220 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 8e-76 | 72 | 257 | 37 | 220 | p24: plant transcriptional regulator PBF-2 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.10579 | 0.0 | root| xylem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_172893.1 | 8e-81 | ssDNA-binding transcriptional regulator | ||||
Refseq | XP_018447906.1 | 9e-81 | PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic | ||||
Swissprot | Q9M9S3 | 7e-82 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A9NQE8 | 1e-119 | A9NQE8_PICSI; Uncharacterized protein | ||||
STRING | AT1G14410.1 | 3e-80 | (Arabidopsis thaliana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 8e-84 | ssDNA-binding transcriptional regulator |