PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta003861 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 262aa MW: 29522.1 Da PI: 8.1817 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.6 | 2.4e-19 | 162 | 216 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+++++++q Lee F+knr p ++++eLA +l+L rqV vWFqNrRa+ k Pta003861 162 RKKHRLSRDQRALLEESFKKNRAPEPKQKQELALQLNLRPRQVEVWFQNRRARTK 216 78999************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 104.6 | 8.1e-34 | 162 | 249 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rls++q +lLEesF++++ ep++K+ela +L+l+prqv+vWFqnrRARtk kq+E+d+e++kr +al++en++L+ e e+L+ Pta003861 162 RKKHRLSRDQRALLEESFKKNRAPEPKQKQELALQLNLRPRQVEVWFQNRRARTKVKQIEVDCEVMKRYNEALADENRKLQMELEKLK 249 69************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-19 | 158 | 218 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-18 | 158 | 219 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.993 | 158 | 218 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-16 | 160 | 222 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.38E-18 | 162 | 219 | No hit | No description |
Pfam | PF00046 | 1.0E-16 | 162 | 216 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 193 | 216 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 6.6E-13 | 218 | 261 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 9.7E-7 | 218 | 250 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGMNQDCNAD LSLGLGIRDG TITDEMYVSQ RNVSGPPLQL RLFPSAPDSD RDSLPWEKTT 60 PSIKAIGVGG EGSAGEAKVL IHPVAVTWRS DANKFPASYF YNEDAGAINV SLSNSSTVDS 120 NASNTGNGYT EIKRKWGYGE ELENELVWLT VLNDVEELGS SRKKHRLSRD QRALLEESFK 180 KNRAPEPKQK QELALQLNLR PRQVEVWFQN RRARTKVKQI EVDCEVMKRY NEALADENRK 240 LQMELEKLKP LKMSSPPLSP RX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 218 | RRARTKVKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NKN4 | 5e-70 | A9NKN4_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47370.1 | 1e-35 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |