PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003746
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 268aa    MW: 29004.6 Da    PI: 6.5306
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20490591PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-77971PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-1490136354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++++L
  Pta003746  90 KSHSEAERRRRERINNHLATLRSLLPNT-----TKTDKASLLAEVIDHVREL 136
                79*************************9.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.28887136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-1290136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1590140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-590140No hitNo description
SuperFamilySSF474591.18E-1591145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-1593142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.6E-5174247No hitNo description
Gene3DG3DSA:3.30.70.2603.0E-7174243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASEAGSSSS NSFSGFQDLI NCGAPLQFSY DYRGGHMMQV PSGLANFSSV DQKSVGDRLF  60
QPVLMSRSAL EMSKMTAQEI VEAKALAASK SHSEAERRRR ERINNHLATL RSLLPNTTKT  120
DKASLLAEVI DHVRELKRMV DDIGQASPVP SEADEVSLEY PDPNEEGRSV IRASLCCEDR  180
PELLSDLIKT LRSLRLRAVK AEIATLGGRV KNVLVVTSGD SQDPNDVSET PSASSIKEAL  240
KAVMEKQNSG DLSPASSSGG NKRQRQVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195100ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.71980.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022015369.11e-72transcription factor bHLH30-like
SwissprotQ9S7Y12e-67BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A251S3N63e-71A0A251S3N6_HELAN; Putative basic helix-loop-helix 32
STRINGGLYMA01G22530.44e-70(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]