PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta003634

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YC

Protein Properties

Length: 272aa MW: 30097.3 Da PI: 6.3959

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S20498555	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-57094	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.2	3.8e-56	86	190	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql+ fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivp Pta003634 86 QLQIFWANQmhdIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 185 89*****8888*********************************************************************************** PP NF-YC 98 rdelk 102 rdelk Pta003634 186 RDELK 190 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.35E-33	78	180	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-37	99	172	IPR009072	Histone-fold
Pfam	PF00808	2.4E-21	108	171	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEQQAPGQQQ PVMGVVSGPP QMPYGTAPYQ TAQLVAPVAP ASVVGTVQSP GQPASAYPAT 60 AAQLAAQHQL AYQHLHQQQQ QQQQQQLQIF WANQMHDIEQ TSDFKNHSLP LARIKKIMKA 120 DEDVRMISAE APVIFAKACE MFILELTLRS WIHTEENKRR TLQKNDIAAA ITRTDIFDFL 180 VDIVPRDELK EEGLGIPRGP VPVGTPAEAI PYYYVPQQHP AAQVAPPGMI VGKPVDPAMY 240 AQQPRPPVAY MPQQMWPQQQ MPEQSRGPSS SS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-59	94	186	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	164	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.1826	0.0	needle\| root\| shoot\| xylem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874674.1	1e-111	nuclear transcription factor Y subunit C-9-like
Refseq	XP_023874675.1	1e-111	nuclear transcription factor Y subunit C-9-like
Swissprot	Q655V5	1e-83	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A0D6QWK9	1e-148	A0A0D6QWK9_ARACU; Uncharacterized protein
STRING	VIT_14s0128g00250.t01	1e-108	(Vitis vinifera)
STRING	XP_008775725.1	1e-108	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-76	nuclear factor Y, subunit C2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]