PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003385
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YA
Protein Properties Length: 283aa    MW: 30254.1 Da    PI: 9.1999
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26636647PU_refUnigeneView CDS
PUT-157a-Pinus_taeda-6455PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.21.8e-30103158258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 p+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh+hAlrR+ g+gGrF
  Pta003385 103 PPVYVNAKQYRGILRRRQSRAKAESENKL-IKSRKPYLHESRHRHALRRAGGCGGRF 158
                59***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-34100161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.302101161IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.9E-22104126IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.8E-26104158IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860106126IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.9E-22135158IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
RPGKLGPESS QIDEQQKPPI QQQQVPSTGI LSAHAESVMR QAQLELGPTG NAFWQAQAAY  60
PYPEPFYGSY VATYGAQAMI PPHMFGVQQA GLPLPPSDMV EEPPVYVNAK QYRGILRRRQ  120
SRAKAESENK LIKSRKPYLH ESRHRHALRR AGGCGGRFLN TKNDGSNEKD VSGDNDSHDS  180
TGQSNKVLNP DSGKDGTSHD LNGIQHIGNL APIGNGISAH SGTVSPGQVG VGESVSNGSH  240
YTYNQRRGFH SSAFHPLSVS TTESGQVGGV VSSGGHHTAV ATX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-19102166266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.116010.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388758.17e-67nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA9NU261e-171A9NU26_PICSI; Uncharacterized protein
STRINGPP1S31_299V6.13e-66(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-43nuclear factor Y, subunit A7