PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003252
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB_related
Protein Properties Length: 289aa    MW: 33430.9 Da    PI: 6.5675
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26638819PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-15320PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-0871110344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      rW++ + el+++a +q+G++ +  I + ++ gRt+ q+k ++
        Pta003252  71 RWSKSDTELFYKAMQQFGTD-FGMIQHFFP-GRTRRQVKAKF 110
                      9*******************.*********.********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.9E-2762142No hitNo description
SMARTSM007171.2E-668116IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-1170118IPR009057Homeodomain-like
CDDcd001671.07E-671111No hitNo description
Gene3DG3DSA:1.10.10.606.2E-571111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
RPGQCVVLNL FWVVLAPQVQ VINGQIVINE ESLVVSHREL NVNDIHTYRR VEETSSKLNY  60
HTYMNRTPLE RWSKSDTELF YKAMQQFGTD FGMIQHFFPG RTRRQVKAKF KIEERKHPLQ  120
LANALIHRPQ DHSHFEMLID RLKISSAPVE HDNNDHNKFE SLNLNNVPIE DSHDAHERRE  180
TVTNQMNSTI DSPKTHENEQ NEEMQVTEQH SGLYNDNYVD LSKNNGENPS STMRTHSSME  240
ESNACKEASP SPENASDEPI RKPAKSPFAY QLASSKPVKS LFSYQQLNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S3e-1223125369473Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S3e-1223125369473Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S3e-1223125369473Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S3e-1223125369473Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V3e-1223125369473Transcription factor TFIIIB component B''
6f40_W3e-1223125369473Transcription factor TFIIIB component B''
6f41_W3e-1223125369473Transcription factor TFIIIB component B''
6f42_W3e-1223125369473Transcription factor TFIIIB component B''
6f44_W3e-1223125369473Transcription factor TFIIIB component B''
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024359822.14e-47transcription factor TFIIIB component B''-like
TrEMBLA0A2K1IRN78e-46A0A2K1IRN7_PHYPA; Uncharacterized protein
TrEMBLA9TZ941e-45A9TZ94_PHYPA; Predicted protein
STRINGPP1S382_35V6.11e-46(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.18e-28MYB_related family protein