PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003226
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family DBB
Protein Properties Length: 291aa    MW: 31751.6 Da    PI: 5.6761
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S24912932PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-9977PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07447542
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                C+ +e+ e+++ C  ++  lC  C  + H        H++v+l
  Pta003226  4 QCDVCEKAEATFLCCADEAALCSACDNNVHAAnklaskHQRVSL 47
               7*****************************66789999998875 PP
2zf-B_box32.12.3e-105394237
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
               + +kC+ ++ek   +fC +++ llC++C +++H +       H
  Pta003226 53 QSPKCDICQEKTGYFFCLEDRALLCRQCDVSIH-SlnnlvaaH 94
               789******************************.434455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.096147IPR000315B-box-type zinc finger
SMARTSM003362.3E-10147IPR000315B-box-type zinc finger
CDDcd000214.70E-7347No hitNo description
PfamPF006432.4E-5447IPR000315B-box-type zinc finger
SuperFamilySSF578459.84E-55087No hitNo description
PROSITE profilePS501199.4285299IPR000315B-box-type zinc finger
SMARTSM003364.9E-155299IPR000315B-box-type zinc finger
PfamPF006431.7E-85395IPR000315B-box-type zinc finger
CDDcd000211.11E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKVQCDVCEK AEATFLCCAD EAALCSACDN NVHAANKLAS KHQRVSLINP SSQSPKCDIC  60
QEKTGYFFCL EDRALLCRQC DVSIHSLNNL VAAHQRFLVT GVKVGLEPSN TISPSTKTST  120
QSSDITNKKP ETLRNGPTEV SASLHQGVQK GIGGGGISRR GTVSEYFSDV LPLWRMDEFL  180
NLPELDNGYG FGEAGSSRAD NANFVEEWPA NSFSTEEDNS ENCLAQVPEM ASPPTASGLY  240
WPRKIICQSK EGKRREDLTI FGFDDASLVP DIGCRSSPPD SPLSKRRRLH A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284288KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.106260.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006852677.15e-82B-box zinc finger protein 22
TrEMBLB8LM300.0B8LM30_PICSI; Uncharacterized protein
STRINGERN141442e-81(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-69light-regulated zinc finger protein 1