PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta003110

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

MYB_related

Protein Properties

Length: 296aa MW: 32245.2 Da PI: 7.664

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S21717398	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-37350	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.3	3.5e-13	34	78	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g ++ q++s+ qky Pta003110 34 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKSVIQIRSHAQKY 78 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.36E-16	28	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.873	29	83	IPR017930	Myb domain
TIGRFAMs	TIGR01557	7.2E-18	32	81	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.3E-6	33	74	IPR009057	Homeodomain-like
SMART	SM00717	9.9E-11	33	81	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-11	34	78	IPR001005	SANT/Myb domain
CDD	cd00167	2.93E-8	36	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MIPAGGAAAV AVTSVEEGGE LKKIRKPYTI TKSRESWTEQ EHDKFLEALQ LFDRDWKKIE 60 AFVGSKSVIQ IRSHAQKYFL KVQKTGNGEH VPPPRPKRKS ARPYPQKASK LGILASAQNS 120 TSGLPSSTMP GEYGFSLGSQ SGDAFTSQDT SSQPISSWIH HGVPRGTDTS GLIDVGNTNV 180 NGRNGNSSDD SSTNEWSLQS TPDQINQEFC LKGTPDFSEI YKFIGSTFDP GVTGHLKKLK 240 EMAPIDRETI MLLMRNLSIN LSSPDFEENK LVSSPCDMNV GGQRPAVTTI VDGQVV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.17966	0.0	embryo\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024523280.1	5e-98	protein REVEILLE 6 isoform X3
Swissprot	Q8RWU3	3e-83	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A0D6QZ13	1e-141	A0A0D6QZ13_ARACU; Uncharacterized protein
STRING	EFJ04991	9e-95	(Selaginella moellendorffii)
STRING	EFJ36434	1e-94	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.1	7e-69	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]