PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta003018

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bZIP

Protein Properties

Length: 301aa MW: 33502.8 Da PI: 9.307

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S25796322	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-50037	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.3	1.2e-11	114	173	5	64
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 kr +r NR +A rs +RK +i eLe+kv++L++e ++L +l l+ +a l s+++ Pta003018 114 KRVKRILANRQSAARSKERKMRYISELERKVQTLQTEATTLSAQLTLLQRDSAGLGSQNH 173 8999*************************************************9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-18	110	174	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	112	175	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.5E-12	114	170	No hit	No description
SuperFamily	SSF57959	1.76E-11	114	165	No hit	No description
Pfam	PF00170	3.0E-10	114	172	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.30E-22	115	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
XSEVNEFNIM KRSNSGVGYE DNKRSGGQGD GNQYRSRHSR SISMDSIMSK MHTFSEDLEQ 60 EPSQGRNVRH SHSNSMDGST NFNVEFGNGE FSASEMKKIM ASEKLAELAT VDPKRVKRIL 120 ANRQSAARSK ERKMRYISEL ERKVQTLQTE ATTLSAQLTL LQRDSAGLGS QNHELKLRLQ 180 AMEQQAQLRD ALNEALGEEV QRLKLATGQL GAGQSGSLAQ QMSMNSSLFQ LQQQGPHHPL 240 YQMQQQQQQH QVQYSQQPPG KQTNRNEVLQ TSYTSLPGPV GSSSKPDNSN MSASQGSDCS 300 F

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.8922	0.0	root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006852991.1	5e-97	probable transcription factor PosF21 isoform X1
Refseq	XP_011626470.1	4e-97	probable transcription factor PosF21 isoform X2
Swissprot	Q04088	1e-58	POF21_ARATH; Probable transcription factor PosF21
Swissprot	Q6S4P4	2e-59	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	B8LQ18	1e-107	B8LQ18_PICSI; Uncharacterized protein
STRING	ERN14458	2e-96	(Amborella trichopoda)

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]