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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pta002833 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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| Family | bZIP | ||||||||
| Protein Properties | Length: 312aa MW: 34301.3 Da PI: 10.3851 | ||||||||
| Description | bZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | bZIP_1 | 30.2 | 9.8e-10 | 116 | 167 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
kr++r NR +A rs +RK +i eLe++v++L++e ++L +l l+
Pta002833 116 KRAKRILANRQSAVRSKERKMRYISELERRVQTLQTEATTLSAQLTLLQRGT 167
9*****************************************9999987655 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00338 | 5.1E-16 | 112 | 176 | IPR004827 | Basic-leucine zipper domain |
| PROSITE profile | PS50217 | 10.611 | 114 | 177 | IPR004827 | Basic-leucine zipper domain |
| Pfam | PF00170 | 1.5E-8 | 116 | 165 | IPR004827 | Basic-leucine zipper domain |
| SuperFamily | SSF57959 | 4.85E-11 | 116 | 167 | No hit | No description |
| Gene3D | G3DSA:1.20.5.170 | 5.1E-10 | 116 | 170 | No hit | No description |
| CDD | cd14703 | 3.87E-22 | 117 | 165 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 312 aa Download sequence Send to blast |
SDFMYMDMEK LTSFGEPLNS AAGEGSKLPS GAETNRPPHH SRSLSVDAVF TGFEGNMEDT 60 KGNLGTMGPS RPRHRHSNSM DGSSSSQLNQ LSSESLESKK AMAAKKLQEL ALIDPKRAKR 120 ILANRQSAVR SKERKMRYIS ELERRVQTLQ TEATTLSAQL TLLQRGTTGL TTENNELKLR 180 LQAMEQQAQL RDALNEALRE KVQRLKIATG QLSSNNTNAF NMSATAQQLP LNRSFFPPTQ 240 HSHRLNQQFQ PFQHSASPMN NQPLMGQSQV HQNFPQYGPA GQLQVLVGSQ GGPAVESEVS 300 SSSVNHPGSS AF |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024404099.1 | 3e-81 | transcription factor RF2a-like | ||||
| TrEMBL | B8LLI3 | 0.0 | B8LLI3_PICSI; Uncharacterized protein | ||||
| STRING | PP1S20_116V6.1 | 1e-80 | (Physcomitrella patens) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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