PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta002828 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | MYB | ||||||||||||
Protein Properties | Length: 312aa MW: 35180.1 Da PI: 6.4239 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++ G g+W+t ++ g+ R +k+c++rw ++l Pta002828 17 RGSWTPEEDRILKTYIEANGVGRWSTLPQNAGLMRRGKSCRLRWMNHL 64 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1.1e-15 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Pta002828 70 RGHISADEEELIIRLHNLLGNR-WSLIAGRVP-GRTDNEVKNYWNT 113 667799****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.243 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.59E-27 | 16 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-11 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-12 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-9 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.665 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-14 | 70 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-24 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-11 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MRRTKGLSKP SDGVLHRGSW TPEEDRILKT YIEANGVGRW STLPQNAGLM RRGKSCRLRW 60 MNHLRPNVKR GHISADEEEL IIRLHNLLGN RWSLIAGRVP GRTDNEVKNY WNTRLSKKLG 120 STGDNLARSL ARRQIAKASP RIGMDNDAAV HLNSESPNFK FTPSLRSPTG STIVPEETRS 180 DIQLPSPESN NDGDRRTTVQ KDDTPHLEPL DIAQTNSCGV PPPEEIGQCS AQESGFVEQN 240 HDMNSLGKEQ SPDFSSTPYN TCLDSLLWFN YSPEMDDLFH CDYDQETSFS VSFSDHLQYI 300 SFGSQFWGDM IS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-23 | 15 | 119 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.12359 | 0.0 | root| shoot |