PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta002786

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

NF-YC

Protein Properties

Length: 314aa MW: 35486.7 Da PI: 6.9317

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26628917	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-15100	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.2	1.5e-55	75	178	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+filelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdivp Pta002786 75 QLHMFWAFQmqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTMRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 174 799*98866789********************************************************************************** PP NF-YC 98 rdel 101 rd+l Pta002786 175 RDDL 178 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.03E-35	63	169	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.7E-38	89	161	IPR009072	Histone-fold
Pfam	PF00808	4.7E-21	97	160	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MDHHNHHQHH PSSSSGGAAP QGMSQGYPGG AAAQPSPVGM QGQAGQIVQT GLHQSGGQQA 60 FHHHHMQQQQ QQQQQLHMFW AFQMQEIEQV SDFKNHQLPL ARIKKIMKAD EDVRMISAEA 120 PVLFAKACEM FILELTMRSW IHAEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDDLKE 180 EGLGLGFARG GVTPEGSFYY PPPSMPQSPH QQGMMGSSSI MMGRPVPLQM DPSAMYMHQQ 240 QQPRPYGMPT HPHQPMWQHP HHPHQQQQQQ QMPDGQSYGH PHQQQQQHMP DGQPYGQQQM 300 TDEHSYGTSP RSAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-56	83	175	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	153	RRTLQKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.14817	0.0	embryo\| root\| shoot\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269\|PubMed:11250072, ECO:0000269\|PubMed:17322342, ECO:0000269\|PubMed:9662544}.

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026377374.1	9e-76	nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	4e-73	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A9NKD3	1e-155	A9NKD3_PICSI; Uncharacterized protein
STRING	XP_002511172.1	2e-74	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-63	nuclear factor Y, subunit C2

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]