PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002572
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 328aa    MW: 36628.4 Da    PI: 7.3282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25556723PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-51509PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.5e-09140187455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  Pta002572 140 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQALQ 187
                8*************************9....677****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.87E-10134191No hitNo description
SuperFamilySSF474596.54E-17134205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.669136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16136204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6140187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
RPGEAEETMM AQRLNILGGN DSSISEHQQT NAHSDLTSKD TVNHRKRKCL SNPKVKVADA  60
LSIPLKIKET NETERSGKHY KVGESTKDKD DLKDKLEECN SAETAESCPK QTVDNVKPSS  120
VPVKQDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT GKAVMLDEII  180
NYVQALQCQV EFLSMKLAAV NPQMDYNVEG GYLTRDVLQP HCSSVSKMFA PETTATTSQI  240
NQLQKTPLQH GMQCRADRQE VAIRGMMDTQ LTCMNGHADP TFQLQMSQGW DDVFQNAVDI  300
GLDQNRSTSL KSHGFHGLLP TGHMKVEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.216480.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9CAA98e-56BH049_ARATH; Transcription factor bHLH49
TrEMBLA9NUY00.0A9NUY0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]