PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002569
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 328aa    MW: 34488.9 Da    PI: 8.9914
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20498695PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-27884PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.46.7e-10125151127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+lC++f     C++Gd+C+FaHg+
  Pta002569 125 YKTRLCSNFGTDIGCRFGDKCHFAHGE 151
                9************************96 PP
2zf-CCCH38.12.6e-12295319126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC ++a+ GtC +GdrC+FaHg
  Pta002569 295 FKTKLCENYAQ-GTCTFGDRCHFAHG 319
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.75986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.8785987IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-66084IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-56085IPR000571Zinc finger, CCCH-type
PfamPF146083.76784No hitNo description
Gene3DG3DSA:4.10.1000.108.9E-15120155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-8121155IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-5124151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502124152IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-7125151IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.29E-13202278IPR004088K Homology domain, type 1
SMARTSM003221.6E-10207277IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.9E-15208276IPR004088K Homology domain, type 1
PROSITE profilePS5008414.278208272IPR004088K Homology domain, type 1
PfamPF000136.3E-11210273IPR004088K Homology domain, type 1
CDDcd001051.89E-12212272No hitNo description
Gene3DG3DSA:4.10.1000.103.5E-16291324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-9292324IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8294320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.699294321IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9295319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDPFGHARKK ARSETFLNEN GGLFNPHESN IFGDGNRFKA GGMKFALQPE KESLPTGLGS  60
KSKACTKFFS LSGCPYGEGC HFQHYVPGGV NPVTQIGTLG TALGAASKKP TGLLPAEPTL  120
NASNYKTRLC SNFGTDIGCR FGDKCHFAHG EKELGKVNAV AHNLKDDLAT GPFGSRFPVG  180
GLDGKPGGRP GYGEATPGMA AAATFGASAT AKISVDAALA GAIIGKGGVN SKQICRSTGA  240
KLAIRDHESD TNLKNIELEG SFDQIKEASA LVRQLIMHTS ATLPAKQPSF TTNNFKTKLC  300
ENYAQGTCTF GDRCHFAHGA SELRDNSK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.129990.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.11e-106PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-92C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB8LN830.0B8LN83_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-105(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-38C3H family protein