PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002544
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HD-ZIP
Protein Properties Length: 330aa    MW: 36814.2 Da    PI: 6.7096
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26636103PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-73277PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18181235256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+  ++keq   Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  Pta002544 181 RKKLHLSKEQSALLEESFREHHTLNPKQKNALAKRLSLKSRQVEVWFQNRRARTK 235
                678889***********************************************98 PP
2HD-ZIP_I/II120.31e-38181270191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk++lskeq++lLEesF+e+++L+p++K++la++L l+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++eveeLr ++
    Pta002544 181 RKKLHLSKEQSALLEESFREHHTLNPKQKNALAKRLSLKSRQVEVWFQNRRARTKLKQTEVDCEVLKRCCETLTEENRRLQREVEELR-AI 270
                  69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17160238IPR009057Homeodomain-like
SuperFamilySSF466899.84E-18168238IPR009057Homeodomain-like
PROSITE profilePS5007116.763177237IPR001356Homeobox domain
SMARTSM003891.1E-14179241IPR001356Homeobox domain
CDDcd000867.78E-15180238No hitNo description
PfamPF000462.8E-15181235IPR001356Homeobox domain
PROSITE patternPS000270212235IPR017970Homeobox, conserved site
PfamPF021832.0E-11237270IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.4E-23237280IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
RPGNFVSLYI FTLNIFQSRI YTHNMFLSRP RDINLVSEKQ EGHEEYLSVD LTMAVSAGLG  60
ITRSHGSEVG AAQLADTSSS QTAGSLRNFD MNRLPSGTDE EGGGGSSSAV STVSPFLSDI  120
MVRYGEKDNG TWDGEVNERT HYQDQGLYNQ NTESLRNIAG NCEEDEGDHV SAGGDGSPPP  180
RKKLHLSKEQ SALLEESFRE HHTLNPKQKN ALAKRLSLKS RQVEVWFQNR RARTKLKQTE  240
VDCEVLKRCC ETLTEENRRL QREVEELRAI KVAPPCVIAQ DFYMPLPAAT LTMCPSCERV  300
GSNIDMKRGT LTFAKPSYYL TNLRQSSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229237RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.161690.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974113.24e-80homeobox-leucine zipper protein HOX19
SwissprotQ6YPD06e-60HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
STRINGPP1S42_217V6.11e-77(Physcomitrella patens)