PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002535
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 330aa    MW: 35301.8 Da    PI: 9.1859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20931413PU_unrefUnigeneView CDS
gnl|UG|Pta#S25534661PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-24697PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-067295225
               -S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
               k + C  f+ t  C++G++C+F+H
  Pta002535 72 KSKACTKFFSTSGCPFGENCHFMH 95
               6678******************** PP
2zf-CCCH21.73.5e-07140166127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                ykt+ C+++     C++Gd+C+FaH++
  Pta002535 140 YKTRMCNRHGTAEGCRFGDKCHFAHSE 166
                9******999999************95 PP
3zf-CCCH37.83.1e-12301325126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +f++ GtC +GdrC+FaHg
  Pta002535 301 FKTKLCENFSK-GTCTFGDRCHFAHG 325
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.617097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.077098IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-77195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-67196IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-57295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8137170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291139167IPR000571Zinc finger, CCCH-type
SMARTSM003560.35139166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-13140170IPR000571Zinc finger, CCCH-type
PfamPF146080.026147164No hitNo description
SuperFamilySSF547911.07E-14205285IPR004088K Homology domain, type 1
SMARTSM003224.0E-9214284IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.2E-15214284IPR004088K Homology domain, type 1
PROSITE profilePS5008414.194215279IPR004088K Homology domain, type 1
PfamPF000133.3E-10217280IPR004088K Homology domain, type 1
CDDcd001059.77E-13219280No hitNo description
Gene3DG3DSA:4.10.1000.107.5E-16298330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.765300327IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-7300326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8300330IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9301325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDPFGPPRKK LRPEVEFVNG NGGIHTHTHA LTDVGTRRFN PSDIVYGDPA RFKQPTFVSP  60
EMESLPTGLG SKSKACTKFF STSGCPFGEN CHFMHYSPGG VNLISQVSNL GSGLRTASRN  120
STGPPTSILP PDQAAAVQPY KTRMCNRHGT AEGCRFGDKC HFAHSENELK KGNTLAPVER  180
EWTSSYGRPV PGGGRLVQHE ATTPGMAAAA SFGSSATAKI SVDASLSGAI IGKGGVNSKQ  240
ICRVTGVKLA IKDHESDSNL KNIELEGSFD QIKQASTMVH ELIMQTRAVA AKPSGFVSNN  300
FKTKLCENFS KGTCTFGDRC HFAHGASELR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.343730.0needle| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265899.11e-108PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-93C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA9P2810.0A9P281_PICSI; Uncharacterized protein
STRINGXP_010265899.11e-107(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-50C3H family protein