PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002320
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 344aa    MW: 36140.1 Da    PI: 8.462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S23078142PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-71807PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12112157555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P++      K +Ka++L + +eY+k Lq
  Pta002320 112 HSIAERLRRERIAERMKSLQELVPNS-----NKTDKASMLDEIIEYVKFLQ 157
                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17105166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.244107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16109166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-12111161No hitNo description
PfamPF000102.6E-9112157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
XFGQRSHSED KMLARENRSG DTEHDDLQGT LLTSYTGPQG GQTVLPRTPG AQSHQQNLST  60
QTIQSGEGTS LQQYGNHSAV SQLQSGAGGG NAANGAARPR VRARRGQATD PHSIAERLRR  120
ERIAERMKSL QELVPNSNKT DKASMLDEII EYVKFLQLQV KVLSMSRLGG AGAVAPLIAD  180
VPSQGSGGVM STALGQASGP LTLSQDGLAF EQEVARLMES NMTSAMQYLQ NKGLCLMSIA  240
LATAISSSSG KPVLATVPGT GVDSSEKQNS DMQSIVLPFS SSSTTMGLRA TASGSDAPIN  300
ENSINKASIE KVVAEKSNGI SPGLSSDVPK VGSQSREELL KRAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.7610.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020531967.13e-82transcription factor bHLH62 isoform X1
RefseqXP_020531971.13e-82transcription factor bHLH62 isoform X1
TrEMBLA0A176VEA56e-79A0A176VEA5_MARPO; Uncharacterized protein
TrEMBLA0A1B0Z2N24e-80A0A1B0Z2N2_MARPO; BHLH transcription factor
TrEMBLW1NKT75e-81W1NKT7_AMBTC; Uncharacterized protein
STRINGERM960819e-82(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-41LJRHL1-like 3