PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002271
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Dof
Protein Properties Length: 347aa    MW: 36490.2 Da    PI: 7.6279
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21717547PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-112982549PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.5e-393090262
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               +++ +kcprCds ntkfCyynny+lsqPryfCk+CrryWtkGGalrnvPvGgg+rknk+s+
  Pta002271 30 PTQVQKCPRCDSLNTKFCYYNNYNLSQPRYFCKNCRRYWTKGGALRNVPVGGGCRKNKRSN 90
               57889*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027014.2E-333288IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-253283IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5163488IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103672IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MQVSSSSFEG IPDMAVAVQN LGGRRSKPHP TQVQKCPRCD SLNTKFCYYN NYNLSQPRYF  60
CKNCRRYWTK GGALRNVPVG GGCRKNKRSN KRNSDKRPAA SSAPPASAAD NQAAGGASAA  120
SSSSSLVNGS DRSSIGFESD CNNTTTSTTT TNTGGATGTP AGVSSGQLFD GMNPINPPPP  180
SLDPQARGAL LNSGNNLSSI LDPSAYENAQ FSCMDPVISS TPDWSRGLSM PWKQQQTLTS  240
LLTDGIRTSL DGFLSQPPPL LEDINSLAEA ATRSVFGVKT SAATVPWPSL QDDDNIKAQS  300
LQGLEWQTAN GNSSSDAGLL EIQSDLGPWG AGSWPDLGNY GPGSSLP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.70370.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB0BCH10.0B0BCH1_PINPS; Dof transcription factor