PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002124
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 358aa    MW: 40403.7 Da    PI: 10.3378
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S23081094PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-63447PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31288345359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Pta002124 288 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGEHNHS 345
                99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.8E-19239284IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.2E-33274345IPR003657WRKY domain
PROSITE profilePS5081130.044281347IPR003657WRKY domain
SuperFamilySSF1182904.58E-27284345IPR003657WRKY domain
SMARTSM007742.0E-38286346IPR003657WRKY domain
PfamPF031066.8E-27288344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MREINNVEEA NRAGLDSSYR VLAILAQQRQ QQHQDQRHDI ITVSDLDMAT KEAISKFQKV  60
VSLLGARTGH ARFRRGPRQS PAYTKACMES PSYCFSQHVS PGLVSPPELS PSPAPTRQFM  120
PSQNSAPTVF GMNAHHHRQQ QLYQHQQQQQ QQQQQKLHYS QLQQQQQQQQ LNFQAELMLR  180
NNSFMKFENS ISCTPTLSST KSFMSSLSID GSVANDKPLL TYHQLMNPVQ EGGTVSSSKR  240
KCSGKGDEAG GKCRSTGRCH CSKRRKLRVK RSIRVPAISS KLADIPPDDF SWRKYGQKPI  300
KGSPHPRGYY KCSSVRGCPA RKHVERCLED PSMLIVTYEG EHNHSRKLSG SPNLVVHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20274344271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.173310.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020274554.11e-102protein WRKY1-like
TrEMBLA0A0D6QUH91e-118A0A0D6QUH9_ARACU; Uncharacterized protein
STRINGXP_008805954.11e-101(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-67WRKY DNA-binding protein 21