PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002064
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HB-other
Protein Properties Length: 363aa    MW: 40596.7 Da    PI: 7.1422
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20134199PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-24060PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.61.4e-0549752956
               HHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 29 ereeLAkklgLterqVkvWFqNrRakek 56
               ere+L  kl ++ +q+ +WFqNrR  ++
  Pta002064 49 EREQLG-KLTVQWKQIWNWFQNRRHAQR 75
               556664.578999***********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-51279IPR009057Homeodomain-like
SuperFamilySSF466893.38E-71679IPR009057Homeodomain-like
PfamPF167191.2E-41118245IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRPPLGGAP SFRFLPSETA DMEKALEESK GANPPRDTVL YLAEKFSAER EQLGKLTVQW  60
KQIWNWFQNR RHAQRSKSAK MAVKLNSISS SSDDSLAKRA STNSFASLSG RKVPDSQKME  120
FEARSARDQA WYDVAGFLTH RMLELDDPEV QVRFEGFGAE EDEWVNVKRS VRRRSLPCEV  180
SECIAVLPGD LILCFQEGKE QALYYDAHVL DVQRKQHDIR GCRCRFLVQY DHDQIEEVVP  240
LRKVCRRPET DFRLQALHAS KRSSSTELGQ GLQESKEIST GKISFVSSKE PKGIGNSMES  300
HNQPAAMPMI SFGDALTSAK SQPCLPDSAL NSSERGGNPS TSSSIPQILD LKAADAEMKL  360
VDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-471162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-471162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-471162491134SHH1 SAWADEE
4iur_B3e-471162491134SHH1 SAWADEE
4iut_A3e-471162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-471162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-471162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-471162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-471162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-471162491134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.176730.0embryo| shoot
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275167.11e-128PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_010275168.11e-128PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-108SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLB8LNE31e-141B8LNE3_PICSI; Uncharacterized protein
STRINGXP_010275166.11e-128(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-110sequence-specific DNA binding transcription factors;sequence-specific DNA binding