PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta001983

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

G2-like

Protein Properties

Length: 371aa MW: 41891 Da PI: 8.5703

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S20491839	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-75341	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.7e-34	31	85	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Pta001983 31 KPRLRWTVELHDRFVDAVNQLGGPDKATPKTIMKVMGVKGLTLYHLKSHLQKFRL 85 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.888	28	88	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-32	28	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.55E-17	30	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.9E-24	31	86	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-8	33	83	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-26	127	174	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MYQQQQANKK NNMSMQVSSG DAALVLTTDP KPRLRWTVEL HDRFVDAVNQ LGGPDKATPK 60 TIMKVMGVKG LTLYHLKSHL QKFRLGKQPH KELNDHKDGE RGSRLSEGHG ASTSSSRMMG 120 QEMNEGFHIS EALRMQMEVQ RRLHEHLEVQ RHLQIRIEAQ GKYMQSILEN ACQTLACQTG 180 PSAGTETRRQ ELPDLASKVS NDFFRTPPRG TVNYPSLTEM NTFRGEHNHI RQQTQLTDCS 240 VDSCLTSNET FGKMIEENVQ GVSKKRPMSF YCDNDTSIWE KDGKGDDVRV HELSNELSNA 300 CLGQKETFKG EQRPSSSSVK IESERNSASD VFETRGSQLQ EPASSSKTDK DLRNSPKLER 360 PAPKKNPNCC R

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MYQQQQANKK NNMSMQVSSG DAALVLTTDP KPRLRWTVEL HDRFVDAVNQ LGGPDKATPK  60
TIMKVMGVKG LTLYHLKSHL QKFRLGKQPH KELNDHKDGE RGSRLSEGHG ASTSSSRMMG  120
QEMNEGFHIS EALRMQMEVQ RRLHEHLEVQ RHLQIRIEAQ GKYMQSILEN ACQTLACQTG  180
PSAGTETRRQ ELPDLASKVS NDFFRTPPRG TVNYPSLTEM NTFRGEHNHI RQQTQLTDCS  240
VDSCLTSNET FGKMIEENVQ GVSKKRPMSF YCDNDTSIWE KDGKGDDVRV HELSNELSNA  300
CLGQKETFKG EQRPSSSSVK IESERNSASD VFETRGSQLQ EPASSSKTDK DLRNSPKLER  360
PAPKKNPNCC R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.16346	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006840145.1	7e-98	protein PHR1-LIKE 3
Swissprot	Q94A57	7e-84	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A3G6JA38	1e-133	A0A3G6JA38_PINTA; Myb family transcription factor PHL2
STRING	ERN01820	3e-97	(Amborella trichopoda)

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]