PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta001809 | ||||||||||||
Common Name | Kn1 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | TALE | ||||||||||||
Protein Properties | Length: 389aa MW: 43353.6 Da PI: 5.4362 | ||||||||||||
Description | TALE family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.2 | 7.7e-05 | 364 | 389 | 22 | 47 |
SSS--HHHHHHHHHHCTS-HHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvW 47 +yps++e+ LA+ +gL+++q+ +W Pta001809 364 WPYPSETEKIALAECTGLDQKQINNW 389 69************************ PP | |||||||
2 | ELK | 42.5 | 1.4e-14 | 317 | 338 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqEF+ Pta001809 317 ELKNHLLRKYSGYLSSLKQEFM 338 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.4E-19 | 172 | 216 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.0E-21 | 173 | 214 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.1E-24 | 220 | 271 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.3E-22 | 223 | 269 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.2E-11 | 317 | 338 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.627 | 317 | 337 | IPR005539 | ELK domain |
SMART | SM01188 | 3.9E-8 | 317 | 338 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 8.714 | 337 | 389 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-10 | 339 | 389 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 342 | 389 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.11E-5 | 349 | 389 | No hit | No description |
Pfam | PF05920 | 1.8E-8 | 357 | 389 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MERLNTAAAQ ASSSLYGVNM AEYGDAGVSS MMGLITQHEP EQSENIMSTR IPSSFSSFHG 60 HADCLLSAAM FQGSQGDHKL NPQPGMNQQL VSEQSIMSDS SMPLVKTKAC SGLRNQFEFH 120 REQPGNCYTD QSSNIPLSPI VTSLASQARG EARMIPSLDA NSAHFNVDNE EHAIKSKILA 180 HPQYPSLLGA YIDCQKIGAP PEAVARLDAL TREHQDPQRR TVSIGMDPEL DQFMEAYCEI 240 LTKYHEELAK PFKEAMLFLK KIETQFNSLG KGTIRISSPA DDDEKTEGGG SSEEVEDGSG 300 GETDFQEVDH HAVEDRELKN HLLRKYSGYL SSLKQEFMKK KKKGKLPKDA RQKLLDWWSL 360 HDKWPYPSET EKIALAECTG LDQKQINNW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.9693 | 0.0 | root| xylem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed only in the stems. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021640348.1 | 1e-91 | homeobox protein knotted-1-like 2 | ||||
Refseq | XP_027093057.1 | 1e-91 | homeotic protein knotted-1-like | ||||
Refseq | XP_027150634.1 | 1e-91 | homeotic protein knotted-1 | ||||
Swissprot | O04135 | 3e-87 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | Q5SC65 | 0.0 | Q5SC65_PINTA; Homeobox transcription factor KN1 | ||||
STRING | XP_006472353.1 | 2e-90 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 3e-67 | KNOTTED-like from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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