PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta001718

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

G2-like

Protein Properties

Length: 400aa MW: 44713.4 Da PI: 8.4866

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24913503	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-59604	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av+qLGG++kAtPk++l+ m+vkgLtl+h+kSHLQkYRl Pta001718 48 KPRLRWTPELHERFVDAVSQLGGPDKATPKSVLREMGVKGLTLYHLKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.463	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-32	46	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-17	48	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-10	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	4.6E-24	143	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MEYPSNPGIV LNHGRAPSQP ERQHQQPVLT GSSHYPCDPS VVVSADPKPR LRWTPELHER 60 FVDAVSQLGG PDKATPKSVL REMGVKGLTL YHLKSHLQKY RLGKQPHREV SVDRSNDGGS 120 SDGGHCLSRM ARDSSIAPNH EAMQIADALR AQIEVQRRLH EQLEVQRRLQ LRIEAQGKYL 180 QTILEKAQQT LASEASTSAG LEATRAKLAD LASKLPTNSV KPNYSPVKVA PLMDIHRQDH 240 GDLEAKPHLR DRCSQNQFAG HTMEQRLNES ESPIEKKRCR KLFHERNGGN SPTKLRELCL 300 NASACKTEKE QEEEEEFIKP TTVERPAATR ALVDERMAML VQSNGLSLIQ ADHEPGLYHP 360 HSMLGNCRKV AEGLDLNRKG EGSVPQQGRE LDLNAYGWGR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MEYPSNPGIV LNHGRAPSQP ERQHQQPVLT GSSHYPCDPS VVVSADPKPR LRWTPELHER  60
FVDAVSQLGG PDKATPKSVL REMGVKGLTL YHLKSHLQKY RLGKQPHREV SVDRSNDGGS  120
SDGGHCLSRM ARDSSIAPNH EAMQIADALR AQIEVQRRLH EQLEVQRRLQ LRIEAQGKYL  180
QTILEKAQQT LASEASTSAG LEATRAKLAD LASKLPTNSV KPNYSPVKVA PLMDIHRQDH  240
GDLEAKPHLR DRCSQNQFAG HTMEQRLNES ESPIEKKRCR KLFHERNGGN SPTKLRELCL  300
NASACKTEKE QEEEEEFIKP TTVERPAATR ALVDERMAML VQSNGLSLIQ ADHEPGLYHP  360
HSMLGNCRKV AEGLDLNRKG EGSVPQQGRE LDLNAYGWGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-21	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-21	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-21	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-21	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-20	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	281	EKKRCRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.15259	0.0	root\| shoot

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q8LAJ7	8e-71	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A3G6JCJ0	0.0	A0A3G6JCJ0_PINTA; Myb family transcription factor PHL3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	4e-70	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]