PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001555
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family AP2
Protein Properties Length: 425aa    MW: 47587.8 Da    PI: 7.0152
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25633960PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-16740PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83.1e-14101151155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+++eeAa+a+++a+ + +g
  Pta001555 101 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEEEAARAYDKAAIRCNG 151
                89********.7******5553..2.26**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-43372IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-63566IPR016177DNA-binding domain
PROSITE profilePS510329.2293766IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-83766IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17101161IPR016177DNA-binding domain
CDDcd000187.63E-27101161No hitNo description
PfamPF008477.4E-10101151IPR001471AP2/ERF domain
PROSITE profilePS5103216.002102159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-16102159IPR001471AP2/ERF domain
SMARTSM003802.9E-33102165IPR001471AP2/ERF domain
PRINTSPR003674.1E-6103114IPR001471AP2/ERF domain
PRINTSPR003674.1E-6141161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
FAALHLWLQR LELQRQGLVC DXIHGGGGDD YFGLCEGGFD TAHAAARAYD RAAIKFRGVE  60
ADINFTLTDY QEDLDQTSKL SKEEFVHILR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ  120
FLGKKYIYLG LFDSEEEAAR AYDKAAIRCN GKEAVTNFDP SLYEKEILEE EERVRNLDLS  180
LGIGHVPTQL KKSPSYKSRA EEDSQPNHIG GSTYSNHTQD SKVLSCLTSK GDENAVPEFQ  240
VLPRGHALYW NSQVLQVPEA MKYKESEAHR SEDNAYEQTA TSGSQLYPDH LGNCKKLNMM  300
EDLKEQSFGV PASTVPFWPM RQQQLGWTWQ LHAKGPTSPV FTTNRSSSSG FSPQIHTAFV  360
PSTHGSHNMG LQWAAQSTDP CMVQTPSPHL STRLTNGTDS SDHMVGSNLD FPAKKIKRSS  420
VHRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.181220.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9FV330.0Q9FV33_PICAB; APETALA2-related transcription factor 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-66AP2 family protein