PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta001555 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | AP2 | ||||||||||||
Protein Properties | Length: 425aa MW: 47587.8 Da PI: 7.0152 | ||||||||||||
Description | AP2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.8 | 3.1e-14 | 101 | 151 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++eeAa+a+++a+ + +g Pta001555 101 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEEEAARAYDKAAIRCNG 151 89********.7******5553..2.26**********************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-4 | 33 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-6 | 35 | 66 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 9.229 | 37 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-8 | 37 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-17 | 101 | 161 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.63E-27 | 101 | 161 | No hit | No description |
Pfam | PF00847 | 7.4E-10 | 101 | 151 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.002 | 102 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 102 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-33 | 102 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 141 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
FAALHLWLQR LELQRQGLVC DXIHGGGGDD YFGLCEGGFD TAHAAARAYD RAAIKFRGVE 60 ADINFTLTDY QEDLDQTSKL SKEEFVHILR RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ 120 FLGKKYIYLG LFDSEEEAAR AYDKAAIRCN GKEAVTNFDP SLYEKEILEE EERVRNLDLS 180 LGIGHVPTQL KKSPSYKSRA EEDSQPNHIG GSTYSNHTQD SKVLSCLTSK GDENAVPEFQ 240 VLPRGHALYW NSQVLQVPEA MKYKESEAHR SEDNAYEQTA TSGSQLYPDH LGNCKKLNMM 300 EDLKEQSFGV PASTVPFWPM RQQQLGWTWQ LHAKGPTSPV FTTNRSSSSG FSPQIHTAFV 360 PSTHGSHNMG LQWAAQSTDP CMVQTPSPHL STRLTNGTDS SDHMVGSNLD FPAKKIKRSS 420 VHRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.18122 | 0.0 | root| shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q9FV33 | 0.0 | Q9FV33_PICAB; APETALA2-related transcription factor 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 2e-66 | AP2 family protein |