PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001313
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GeBP
Protein Properties Length: 468aa    MW: 53033 Da    PI: 6.5991
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S21718894PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-2391PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57329.71.8e-09140231597
     DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiWg 97 
                + ws eDei+l  +l+   +  g   +  + afye +k+ ++++ s+ q+ eK++r++ +f + +++    + +++ +  +++h+ + +++ k+iWg
  Pta001313 140 KKWSAEDEISLANALLVS-SPGG---QVKMPAFYERAKETLKSE-SRGQIYEKMKRMRSRFWTIESQlrdaKITEELFPYRSPHEADLYKVWKQIWG 231
                56*************976.3333...4589***********998.789*************99988866533455566789***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-12140231IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
XAAVSKTVII FECFATSNMS SSALPSSSDG DARSHAKPNS TPPTKFSAAS SDSEPKTPRR  60
GSVMKKTRDG LRPKQSRDRL EIKLPASKKK KNSRKTGPSG NKSQIDIEEL LAQTYPKEPS  120
VLGDATHRSN GLDLAKDTPK KWSAEDEISL ANALLVSSPG GQVKMPAFYE RAKETLKSES  180
RGQIYEKMKR MRSRFWTIES QLRDAKITEE LFPYRSPHEA DLYKVWKQIW GRHERKYEAA  240
QDIEMEQNRE LRSWSHAGQP HNEDVNEGRH ESRTEAAYIN GELRSPSHPL QRQNGEVTDY  300
PPEEEEEHQQ AEEEDNDGET ADKTPPRVAC NHDEEFNLIQ TETRALLSKV KNNVQAMLDD  360
TEAKMEGLID NLFKRAVVAA QVQFLGSDIG IGSCLCSNLS RRMKELETVR SVREFPGLNE  420
AEAKVLQQKW RKHQIEELKT FSGRLELLQE ECKLCIKDLE TANDNYNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16473KKTRDGLRPK
2188193KRMRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.131700.0embryo| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A8570.0D5A857_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-10DNA-binding storekeeper protein-related transcriptional regulator