PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001131
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GRAS
Protein Properties Length: 516aa    MW: 56479.2 Da    PI: 7.0494
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S26630085PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-3012PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.78.9e-1001405112374
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svsely...kalppsetsekn........sseelaalklfsevsP 89 
                ve+Ll++Aeav+ g+l  aqa+Larl+++ sp g+p+qR+a+yf+eALa+r+++ + +++    +  +++ t+  +        ++++++a+k fse+sP
  Pta001131 140 VEQLLKAAEAVELGNLDHAQAILARLNQHLSPLGKPLQRAAFYFKEALASRILNtTATNTGgdnRNATVTGTA--TsnisspldMVHKISAYKSFSEASP 237
                799**************************************************94333332111112222222..13478899999************** PP

       GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                + +f+h+taNqa lea+eg+e++HiiDf+i+ G+QW+++lq+La + +g+p +RiT++gs +++s+ el+ t+++L +fA++l+vpfef++l   +++  
  Pta001131 238 LAQFAHFTANQAFLEALEGAEAIHIIDFEIGLGGQWASFLQELAVKLGGAPPVRITALGS-SASSSLELHLTRDNLCNFAKQLNVPFEFELL---HFD-- 331
                ************************************************************.6679**************************8...444.. PP

       GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse..........sFlerflealeyysalfdsleaklpres 279
                ++e+L ++++Ea+aVnl+l l ++++++ s+    +++L+lvk+l P+ vvvv+ e+  +++          sF+++fleal++ys lfdsl+a    + 
  Pta001131 332 HIESLTLREREAVAVNLSL-LPSTFSSPDSI----SRLLRLVKNLAPRAVVVVDAETTATAAaasaattssaSFVHHFLEALQFYSFLFDSLDAV-NINM 425
                5589999************.44444344444....46*******************6654444556666666********************776.5688 PP

       GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ++ +k+E++ll+++i   ++ + a           W+  + +aGF+pv++s+++++qa++l+++ +s+g++ve+ +++l+lgW++rpLvs++aWr
  Pta001131 426 DAVHKIEKFLLAPKIDATISSAAAP---------PWKTLFAAAGFSPVAFSNFTETQAEYLIQRLHSRGFEVEKAHAALLLGWQGRPLVSATAWR 511
                9******************998886.........9***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.114113491IPR005202Transcription factor GRAS
PfamPF035143.1E-97140511IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MPTPFGPNAY HPEVLFSGPA VYGSNPVQHL GPDFPRFNMA ADPNRNNNNL LFDMPHPPPP  60
KRFGLEHQLW QQTFKQQEYM NMMKPQQQQE LLQSLHRRQQ FLHQAPPPSP HHQLRQKAVV  120
NHTFKVGGSG AVADEVHVIV EQLLKAAEAV ELGNLDHAQA ILARLNQHLS PLGKPLQRAA  180
FYFKEALASR ILNTTATNTG GDNRNATVTG TATSNISSPL DMVHKISAYK SFSEASPLAQ  240
FAHFTANQAF LEALEGAEAI HIIDFEIGLG GQWASFLQEL AVKLGGAPPV RITALGSSAS  300
SSLELHLTRD NLCNFAKQLN VPFEFELLHF DHIESLTLRE REAVAVNLSL LPSTFSSPDS  360
ISRLLRLVKN LAPRAVVVVD AETTATAAAA SAATTSSASF VHHFLEALQF YSFLFDSLDA  420
VNINMDAVHK IEKFLLAPKI DATISSAAAP PWKTLFAAAG FSPVAFSNFT ETQAEYLIQR  480
LHSRGFEVEK AHAALLLGWQ GRPLVSATAW RCGPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5014551025378Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.92000.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258971.11e-119PREDICTED: scarecrow-like protein 6
TrEMBLA0A0B4U9D40.0A0A0B4U9D4_PINRA; SCL12 (Fragment)
STRINGXP_010258971.11e-118(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-83GRAS family protein