PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000904
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family HD-ZIP
Protein Properties Length: 818aa    MW: 89822.8 Da    PI: 6.4253
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S34066898PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-14769PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-181875457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Pta000904 18 YVRYTAEQVEALERLYNDCPKPSSLRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 75
               5789****************************************************97 PP
2START155.93.3e-491633702204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++++++ka++++  W +++ +++g++++ +++ s++++g a+ra+g+   ++   v+++l+d++ W +++++ ++l +  +g  ga +l +++++
  Pta000904 163 IAEETLTQFLSKATETAVDWIQMPGMKPGPDSIGIVTISNSCTGVAARACGFAGLEPS-KVADILKDRPAWLHDCRRLDVLTAFPTGkgGAFELLYTQMY 261
                7899******************************************************.9999999999******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l+p Rd +++Ry+  l++g++v++++S++ +q+ p+    +++vR ++lpSg+li+p+++g++ +++v+h+dl+ +++++++r+l++s+++ ++k+
  Pta000904 262 APTTLAPaRDLLTLRYTSLLEDGSLVVCERSLTGTQSGPNmppVQHFVRTQMLPSGYLIRPCEGGGCIIHIVDHMDLEPWSVPEVIRPLYESSAVLAQKM 361
                *************************************99998899******************************************************* PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                +  +l++++
  Pta000904 362 TITALRHLR 370
                *99999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1271276IPR001356Homeobox domain
SMARTSM003892.7E-141480IPR001356Homeobox domain
CDDcd000863.21E-151777No hitNo description
SuperFamilySSF466895.56E-161779IPR009057Homeodomain-like
PfamPF000461.1E-151875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-171975IPR009057Homeodomain-like
CDDcd146861.71E-669108No hitNo description
PROSITE profilePS5084823.207153381IPR002913START domain
CDDcd088751.30E-70157371No hitNo description
SMARTSM002347.5E-36162372IPR002913START domain
SuperFamilySSF559612.61E-36162374No hitNo description
Gene3DG3DSA:3.30.530.207.4E-22162368IPR023393START-like domain
PfamPF018522.1E-46163370IPR002913START domain
PfamPF086701.4E-40697818IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MTVTVVTAQS FGMEAGKYVR YTAEQVEALE RLYNDCPKPS SLRRQQLIRE CPILSHIEPK  60
QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQQ  120
IQTVSITTTD TSCESVVTSG PHPHHLTPQH PPRDASPAGF LSIAEETLTQ FLSKATETAV  180
DWIQMPGMKP GPDSIGIVTI SNSCTGVAAR ACGFAGLEPS KVADILKDRP AWLHDCRRLD  240
VLTAFPTGKG GAFELLYTQM YAPTTLAPAR DLLTLRYTSL LEDGSLVVCE RSLTGTQSGP  300
NMPPVQHFVR TQMLPSGYLI RPCEGGGCII HIVDHMDLEP WSVPEVIRPL YESSAVLAQK  360
MTITALRHLR QVAQEVSGEV VLGWGRQPAA LRAFSQRLCR GFNDAVNGFA DDGWSLLGSD  420
GVEDVIIAIN SSPSKFLSSQ IASSDGLSAL NGGIMCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADCNIDAY SSATMKANAY NVPGSLGGIT GSQVILPLAH TVEHEEFLEV IKLEGHGLTH  540
EEALLSKDMF LLQLCSGIDE HAAGFCSQLV FAPIDASFAD DAPLLPSGFR VIPLESGSDV  600
SPPNRTLDLA SALEIGSAGT RASGDCGDSP CNLRSVLTIA FQFTYQNNVR DSVAAMTRQY  660
VRNVIASVQR VAIALAPSQQ SPHIGPRLPP GTPKALTLTR WIFQSYRMHL GLELIEDNSE  720
PNESVLKLLW HHSDGIMCCS WKPLPVFTFA NQAGLDMLET TLVALQDISL EKILDENGRK  780
RLCSDFTQIM QQGYAYLPSG ICISSMGRPV SYDRAIAW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.59090.0xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006853643.20.0homeobox-leucine zipper protein ATHB-15
RefseqXP_020528699.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4190.0Q0Q419_PINTA; Class III HD-Zip protein HDZ33
STRINGERN151100.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]