PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta000903

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

HD-ZIP

Protein Properties

Length: 844aa MW: 92614.7 Da PI: 6.42

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S34066899	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-50982548	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.2e-18	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Pta000903 18 KYVRYTAEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5679*****************************************************97 PP
2	START	162.5	3e-51	166	374	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 +aee+++e+++ka+ ++ W +++ +++g++ + +++ s++++g a+ra+ +v +++ v+e+l+d+ W ++++++++l + s+g g+++l +++++ Pta000903 166 IAEETLTEFLSKAKGNAVEWIQMPGMKPGPDAIGIVTISHGCTGVAARACSLVGIDPT-KVAEILKDRTSWLRDCRSVDVLTAFSTGngGTIELLYMQMY 264 789*****************************************************.8888888888*************************** PP TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195 a+++l++ Rdf+++Ry+ l++g++v++++S++ +q p+ +++vRae+ pSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++k Pta000903 265 APTTLASaRDFWTLRYTSVLEDGSLVVCERSLSGTQGGPSmpaVQQFVRAEMQPSGYLIRPCEGGGSLIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKV 364 ***********************************999889*************************************************** PP HHHHTXXXXX CS START 196 wvatlqrqce 205 ++++l+++++ Pta000903 365 TMSALRHLRQ 374 ***99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.677	13	77	IPR001356	Homeobox domain
SMART	SM00389	2.2E-15	15	81	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-15	18	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.64E-16	18	81	IPR009057	Homeodomain-like
CDD	cd00086	5.61E-16	18	78	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-18	20	76	IPR009057	Homeodomain-like
CDD	cd14686	1.53E-6	70	109	No hit	No description
PROSITE profile	PS50848	25.951	156	384	IPR002913	START domain
CDD	cd08875	9.69E-81	160	376	No hit	No description
SMART	SM00234	2.7E-36	165	375	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.1E-23	165	370	IPR023393	START-like domain
SuperFamily	SSF55961	1.79E-37	165	377	No hit	No description
Pfam	PF01852	9.1E-49	166	374	IPR002913	START domain
SuperFamily	SSF55961	4.51E-5	405	496	No hit	No description
SuperFamily	SSF55961	4.51E-5	527	606	No hit	No description
Pfam	PF08670	1.2E-51	701	843	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MAVTSGKEGK SSSMDQGKYV RYTAEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQAVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ 120 QVAECLHSNY NTSCESVVTS VKHQQQNHLT PRDPPRDASP AGLLSIAEET LTEFLSKAKG 180 NAVEWIQMPG MKPGPDAIGI VTISHGCTGV AARACSLVGI DPTKVAEILK DRTSWLRDCR 240 SVDVLTAFST GNGGTIELLY MQMYAPTTLA SARDFWTLRY TSVLEDGSLV VCERSLSGTQ 300 GGPSMPAVQQ FVRAEMQPSG YLIRPCEGGG SLIHIVDHMD LEPWSVPEVL RPLYESSTVL 360 AQKVTMSALR HLRQIAQEVS SDVVLGWGRQ PAALRTFSQR LCKGFNEAVN GFTDDGWSLM 420 GNDGMEDVTI LVNSSPSKLF GQQFASSDGL PALGGGILCA KASMLLQNVP PALLVRFLRE 480 HRSEWADSNI DAYSAASWKA SPCTVPSSRI GGFGGGQVIL PLAHTVEHEE FLEVIKLENH 540 GLTQEEALLS RDMFLLQLCS GLDENAVGAC AELVFAPIDA SLADSSPLLP SGFRVIPLDS 600 GMDGSSPNRT LDLASSLEIG SAGARTSVDY GGNSGNLRSV LTIAFQFTFE NHLRENVASM 660 ARQYVRGVVA SVQRVAMALA PSRLGSHLGP RLPPGTPEAL TLARWVCQSY RFHLGVELLR 720 PNSEVNESLL KTLWHHSDAI MCCSLKSLPV FTFANQAGLD MLETTLVALQ DISLEKILDD 780 NGRKSFCSDI AQIMQQGYAY LPAGVCVSSM GRPASYDRAI AWKVLNDEEN PHCIAFMFMN 840 WSFV

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MAVTSGKEGK SSSMDQGKYV RYTAEQVEAL ERLYHDCPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QVAECLHSNY NTSCESVVTS VKHQQQNHLT PRDPPRDASP AGLLSIAEET LTEFLSKAKG  180
NAVEWIQMPG MKPGPDAIGI VTISHGCTGV AARACSLVGI DPTKVAEILK DRTSWLRDCR  240
SVDVLTAFST GNGGTIELLY MQMYAPTTLA SARDFWTLRY TSVLEDGSLV VCERSLSGTQ  300
GGPSMPAVQQ FVRAEMQPSG YLIRPCEGGG SLIHIVDHMD LEPWSVPEVL RPLYESSTVL  360
AQKVTMSALR HLRQIAQEVS SDVVLGWGRQ PAALRTFSQR LCKGFNEAVN GFTDDGWSLM  420
GNDGMEDVTI LVNSSPSKLF GQQFASSDGL PALGGGILCA KASMLLQNVP PALLVRFLRE  480
HRSEWADSNI DAYSAASWKA SPCTVPSSRI GGFGGGQVIL PLAHTVEHEE FLEVIKLENH  540
GLTQEEALLS RDMFLLQLCS GLDENAVGAC AELVFAPIDA SLADSSPLLP SGFRVIPLDS  600
GMDGSSPNRT LDLASSLEIG SAGARTSVDY GGNSGNLRSV LTIAFQFTFE NHLRENVASM  660
ARQYVRGVVA SVQRVAMALA PSRLGSHLGP RLPPGTPEAL TLARWVCQSY RFHLGVELLR  720
PNSEVNESLL KTLWHHSDAI MCCSLKSLPV FTFANQAGLD MLETTLVALQ DISLEKILDD  780
NGRKSFCSDI AQIMQQGYAY LPAGVCVSSM GRPASYDRAI AWKVLNDEEN PHCIAFMFMN  840
WSFV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.5267	0.0	needle\| root\| xylem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006853643.2	0.0	homeobox-leucine zipper protein ATHB-15
Refseq	XP_020528699.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	Q0Q420	0.0	Q0Q420_PINTA; Class III HD-Zip protein HDZ32
STRING	ERN15110	0.0	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Prigge MJ,Clark SE Evolution of the class III HD-Zip gene family in land plants. Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61 [PMID:16805899] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]